DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CysRS and SYCO ARATH

DIOPT Version :9

Sequence 1:NP_611087.1 Gene:CysRS / 36784 FlyBaseID:FBgn0027091 Length:741 Species:Drosophila melanogaster
Sequence 2:NP_565717.2 Gene:SYCO ARATH / 817673 AraportID:AT2G31170 Length:563 Species:Arabidopsis thaliana


Alignment Length:643 Identity:192/643 - (29%)
Similarity:288/643 - (44%) Gaps:188/643 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 KLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFDILRRILSDYFGYNIHYV 83
            :|.|.|:::|:||.|.|.....|..|.||.|.||.||:||||.|::||:|.|.|. :.||.:.||
plant    64 ELWLHNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYLK-HLGYEVSYV 127

  Fly    84 MNITDIDDKIIRRARQNHLFDEYAAEAQKLPLDELLGQQKEVLQRFQDTCAKNTDPDKKIMLDKT 148
            .|.||:|||||.||::               |:|                               
plant   128 RNFTDVDDKIIARAKE---------------LEE------------------------------- 146

  Fly   149 LQRMNDAVEALTKAVGKGDEREISEKRLLYLNEAKDPISDWLDSLKGAQINDNAVFEALPRYWED 213
                                               ||||                   |.|.:.:
plant   147 -----------------------------------DPIS-------------------LSRRFCE 157

  Fly   214 QFHNDMKSLNILPPDVLTRVSEYVPQIVTFIQKIIDNGLAYAANNSVYFDVNGFDKREKHHYAKL 278
            :|:.||:.|..|.|.|..|||:::|||:..|::|:|||.||..:..:||.|:.|..     |.||
plant   158 EFNRDMEQLQCLDPSVQPRVSDHIPQIIDLIKQILDNGYAYKVDGDIYFSVDKFPT-----YGKL 217

  Fly   279 VPEAYGDTKSLQEGEGDLSIAEDRLSEKRSANDFALWKASKAGEPWWDSPWGKGRPGWHIECSAM 343
                  ..:.|::......:|.|  :.|:...|||||||:|.|||:|:||||:||||||||||||
plant   218 ------SGRKLEDNRAGERVAVD--TRKKHPADFALWKAAKEGEPFWESPWGRGRPGWHIECSAM 274

  Fly   344 ASDIFGPTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHLTIAGCKMSKSLKNFVT 408
            ::...|.:||||.||:||.||||:||:|||.||.:.|. :.|::|.|.:|:...||||||.||.|
plant   275 SAAYLGYSFDIHGGGMDLVFPHHENEIAQSCAACDSSN-ISYWIHNGFVTVDSEKMSKSLGNFFT 338

  Fly   409 IQEALKKHSATQLRLAFLLHSWKDTLDYSENTMEMATQYEKFLNEFFLNVKDLTRHVLSEEPRRQ 473
            |::.:..:....|||..:...::..::||:..:|.|::...::.:        |.|         
plant   339 IRQVIDLYHPLALRLFLMGTHYRSPINYSDFLLESASERIFYIYQ--------TLH--------- 386

  Fly   474 FDAWTEVEAALQKK---FSNAQV-------------QVHASLCDNIDTRSALDAIRELVSVSNVY 522
                 :.|:||.:|   |.|..|             :..||:.|::.|...|.|:.|.:...|..
plant   387 -----DCESALGEKDSTFENGSVPSDTLTSINTFRTEFVASMSDDLLTPVTLAAMSEPLKTINDL 446

  Fly   523 IRDNKTRLNSL---LLRNVATYITDLLHVFGAISGPRGGIGFPVSGGSGAQAAGADLETTVLPYV 584
            |...|.:..:.   .|:.:.|.|.|:|.:.|.:         |.|                  |.
plant   447 IHTRKGKKQARREESLKALETTIRDVLTILGLM---------PTS------------------YS 484

  Fly   585 QSLAEFRYLVREQAKTLKAFDILKLCDDLRDNVLPNLGVRLED---KDIGKYAVKLVD 639
            :.|.:.:....::| .||..|:|:...: |.:...|......|   ||:.|..:.|:|
plant   485 EVLEQLKEKALKRA-GLKEEDVLQRVQE-RTDARKNKEYERSDAIRKDLAKVGIALMD 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CysRSNP_611087.1 PTZ00399 2..737 CDD:240402 192/643 (30%)
CysRS_core 21..437 CDD:173899 145/415 (35%)
SYCO ARATHNP_565717.2 PLN02946 6..562 CDD:178532 192/643 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 276 1.000 Domainoid score I415
eggNOG 1 0.900 - - E1_COG0215
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H1328
Inparanoid 1 1.050 291 1.000 Inparanoid score I828
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D528822at2759
OrthoFinder 1 1.000 - - FOG0000992
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100332
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.730

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