DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rho1 and rhobtb2b

DIOPT Version :9

Sequence 1:NP_477098.1 Gene:Rho1 / 36775 FlyBaseID:FBgn0014020 Length:192 Species:Drosophila melanogaster
Sequence 2:XP_017213602.2 Gene:rhobtb2b / 565844 ZFINID:ZDB-GENE-071125-1 Length:722 Species:Danio rerio


Alignment Length:196 Identity:73/196 - (37%)
Similarity:108/196 - (55%) Gaps:26/196 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KLVIVGDGACGKTCLL------IVFSKDQFPEVYVPTVF--ENYVADIE--------VDGKQVEL 55
            |.|:|||.|.|||.|:      ...::.|....:||||:  :.|....|        ||...|.|
Zfish    27 KCVVVGDNAVGKTRLICARACNATLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDDVSVSL 91

  Fly    56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
            .||||.|  |:.:.|..:|..:||:::|||:.:|:||.::...|.||:|||||..|:||||.:.|
Zfish    92 RLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLFHVKTMWYPEIKHFCPRAPVILVGCQLD 154

  Fly   121 LR-NDPNTIRDLAKMKQEPVK------PQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAA 178
            || .|...:....:....|:|      |::||.:|::: ...|.|.|..::.||:|||:.|.|||
Zfish   155 LRYADLEAVNRARRPLARPIKANEILPPEKGREVAKEL-CVPYYETSVVAQFGVKDVFDNAIRAA 218

  Fly   179 L 179
            |
Zfish   219 L 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rho1NP_477098.1 RhoA_like 5..179 CDD:206662 71/194 (37%)
rhobtb2bXP_017213602.2 RhoBTB 24..218 CDD:133275 70/193 (36%)
BTB 270..>310 CDD:321966
BTB <412..456 CDD:333434
BTB 487..579 CDD:197585
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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