DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rho1 and rhoga

DIOPT Version :9

Sequence 1:NP_477098.1 Gene:Rho1 / 36775 FlyBaseID:FBgn0014020 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_001076273.1 Gene:rhoga / 556424 ZFINID:ZDB-GENE-060503-820 Length:191 Species:Danio rerio


Alignment Length:187 Identity:105/187 - (56%)
Similarity:133/187 - (71%) Gaps:1/187 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP 71
            |.|:|||||.|||||||.|:.:.||:.||||||:||.|.:.||.|.|.|.||||||||:|||||.
Zfish     5 KCVVVGDGAVGKTCLLISFTTNAFPKEYVPTVFDNYSAQVLVDSKTVSLNLWDTAGQEEYDRLRT 69

  Fly    72 LSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAKMKQ 136
            ||||.|::.::||||.||.|.||:..||.|||...||||||:|||.|||||:||..::.|.:...
Zfish    70 LSYPQTNIFIICFSVTSPPSFENVKLKWHPEVFEHCPNVPILLVGTKKDLRDDPEELKKLKEKGL 134

  Fly   137 EPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAALQVKK-RKKTRCLLL 192
            ..|..|:|.|:|.:|:|..|:||||.|::||::||..|.|..|..|: ..|..|:||
Zfish   135 SVVSQQQGTALARQIHARKYMECSALSQDGVKEVFTEAARIFLHPKQPSSKKSCVLL 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rho1NP_477098.1 RhoA_like 5..179 CDD:206662 99/171 (58%)
rhogaNP_001076273.1 P-loop_NTPase 1..191 CDD:304359 103/185 (56%)
RHO 6..179 CDD:197554 99/172 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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