DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rho1 and RhoBTB

DIOPT Version :10

Sequence 1:NP_477098.1 Gene:Rho1 / 36775 FlyBaseID:FBgn0014020 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_001262107.1 Gene:RhoBTB / 40249 FlyBaseID:FBgn0036980 Length:783 Species:Drosophila melanogaster


Alignment Length:207 Identity:82/207 - (39%)
Similarity:113/207 - (54%) Gaps:30/207 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KLVIVGDGACGKTCLLIV------FSKDQFPEVYVPTV-----FENYVADIE-----VDGKQVEL 55
            |.|:|||.|.|||.|:..      .|..|....:||||     :..|...:|     |||..|.|
  Fly    15 KCVLVGDTAVGKTRLICARACNKHVSLSQLLSTHVPTVWAIDQYRIYKDVLERSWEVVDGVNVSL 79

  Fly    56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
            .||||.|  |:|:.|..:|..:||:|:|||:.||.||.|....|.||::.|||:||:||||.|.|
  Fly    80 RLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPISLRNCKMMWYPEIRRFCPDVPVILVGCKND 142

  Fly   121 LR---NDPNTIRDL--------AKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETA 174
            ||   .|.|.:...        |.:|.:.|.|.|.||:|:::.. ||.|.|..:..||.:|||.|
  Fly   143 LRYMYRDENYLSYFGEKGTFVRAALKSDLVMPDEARAVAKELGV-AYYETSVFTYFGVNEVFENA 206

  Fly   175 TRAALQVKKRKK 186
            .|:||..:::::
  Fly   207 IRSALIARRQQR 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rho1NP_477098.1 RhoA_like 5..179 CDD:206662 80/198 (40%)
RhoBTBNP_001262107.1 RhoBTB 12..210 CDD:133275 80/197 (41%)
BTB1_POZ_RhoBTB 255..452 CDD:349608
BTB2_POZ_RhoBTB 475..582 CDD:349609
BACK_RHOBTB 593..669 CDD:350574
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.