DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rho1 and rhoca

DIOPT Version :9

Sequence 1:NP_477098.1 Gene:Rho1 / 36775 FlyBaseID:FBgn0014020 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_957444.1 Gene:rhoca / 394125 ZFINID:ZDB-GENE-040426-1337 Length:193 Species:Danio rerio


Alignment Length:193 Identity:166/193 - (86%)
Similarity:178/193 - (92%) Gaps:1/193 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTTIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
            |..|||||||||||||||||||||||||||||||||||||||:||||||.|||||||||||||||
Zfish     1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDSKQVELALWDTAGQED 65

  Fly    66 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIRD 130
            ||||||||||||||||||||:||||||||||||||||||||||||||||||||:|||.|.||.|:
Zfish    66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKRDLRTDENTRRE 130

  Fly   131 LAKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAALQVKKRKK-TRCLLL 192
            |.||||||||.:|||.||.:|:||.|||||||:|:|||:|||.||||||||:|||| :.|.||
Zfish   131 LTKMKQEPVKIEEGRDMANRISAFGYLECSAKTKDGVREVFEMATRAALQVRKRKKRSGCSLL 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rho1NP_477098.1 RhoA_like 5..179 CDD:206662 153/173 (88%)
rhocaNP_957444.1 RhoA_like 5..179 CDD:206662 153/173 (88%)
RHO 8..180 CDD:197554 151/171 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582002
Domainoid 1 1.000 329 1.000 Domainoid score I1138
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H90945
Inparanoid 1 1.050 350 1.000 Inparanoid score I2249
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1166960at2759
OrthoFinder 1 1.000 - - FOG0000943
OrthoInspector 1 1.000 - - otm24996
orthoMCL 1 0.900 - - OOG6_101682
Panther 1 1.100 - - O PTHR24072
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X549
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.760

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