DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rho1 and rho3

DIOPT Version :9

Sequence 1:NP_477098.1 Gene:Rho1 / 36775 FlyBaseID:FBgn0014020 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_001018193.1 Gene:rho3 / 3361511 PomBaseID:SPAC23C4.08 Length:205 Species:Schizosaccharomyces pombe


Alignment Length:181 Identity:101/181 - (55%)
Similarity:125/181 - (69%) Gaps:4/181 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR 68
            |.:|:||:||||.|||.||.||:|..||:||.||:||||:.||.|||..:||:||||||||:||:
pombe    12 IYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQ 76

  Fly    69 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAK 133
            ||.|||.||.||::||:|||.|||||:..||.|||...||.|.::||..|.|||.......|.:|
pombe    77 LRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRGADEEQVDHSK 141

  Fly   134 MKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAALQVKKR 184
            :    :..:||.|.|:||||..|||||||...||.:.|..|.|.||..:.|
pombe   142 I----IDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVALAAQPR 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rho1NP_477098.1 RhoA_like 5..179 CDD:206662 97/173 (56%)
rho3NP_001018193.1 Rho3 14..205 CDD:206706 100/179 (56%)
RHO 16..183 CDD:197554 96/170 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24072
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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