DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rho1 and rhoq

DIOPT Version :9

Sequence 1:NP_477098.1 Gene:Rho1 / 36775 FlyBaseID:FBgn0014020 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_956112.1 Gene:rhoq / 327510 ZFINID:ZDB-GENE-030131-5721 Length:205 Species:Danio rerio


Alignment Length:193 Identity:97/193 - (50%)
Similarity:139/193 - (72%) Gaps:5/193 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD 67
            :|..|.|:|||||.||||||:.::.|.|||.||||||::|...:.|.|||..|.|:|||||||||
Zfish     7 SIMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD 71

  Fly    68 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIRDLA 132
            ||||||||.|||.|:||||.:|.|.:|:.|:|.||::.:.||:|.:|:|.:.|||:||.||..|.
Zfish    72 RLRPLSYPMTDVFLICFSVVNPASFQNVREEWVPELQEYAPNIPYLLIGTQIDLRDDPKTIAKLN 136

  Fly   133 KMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAAL-----QVKKRKKTRCL 190
            .:|::|:..::|:.:|::|.|..|:||||.:::|::.||:.|..|.|     .:|:|...||:
Zfish   137 DVKEKPIVTEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILAPKKGALKRRLGPRCI 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rho1NP_477098.1 RhoA_like 5..179 CDD:206662 91/173 (53%)
rhoqNP_956112.1 P-loop_NTPase 10..183 CDD:304359 91/172 (53%)
RHO 12..185 CDD:197554 91/172 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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