DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rho1 and Rhobtb3

DIOPT Version :10

Sequence 1:NP_477098.1 Gene:Rho1 / 36775 FlyBaseID:FBgn0014020 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_001101115.1 Gene:Rhobtb3 / 309922 RGDID:1311683 Length:611 Species:Rattus norvegicus


Alignment Length:164 Identity:40/164 - (24%)
Similarity:72/164 - (43%) Gaps:18/164 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 VFENYVADIEVDGKQV--ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWT 100
            ||..|.|....:.|.|  :..:||....:.|.....:.  ..|:|::.::|:...|...:.:.:.
  Rat    54 VFTEYQASAFGNVKLVVHDCPVWDIFDSDWYTSRNLIG--GADIIVIKYNVNDKFSFHEVKDNYI 116

  Fly   101 PEVKHFCPNVPIIL--VGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEKINAFAYLECSA-- 161
            |.:|....:||:|:  ||.::: ...|.|.......:...|...||..:|:::.| .|||..:  
  Rat   117 PVIKRASNSVPVIIAAVGTRQN-EELPCTCPLCTSDRGSCVTTTEGIQLAKELGA-TYLELHSLD 179

  Fly   162 -----KSKEGVRDVFETAT---RAALQVKKRKKT 187
                 |...||.:.|....   :|:.::||||.|
  Rat   180 DFYIGKYFGGVLEYFMIQALNQKASEKMKKRKMT 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rho1NP_477098.1 RhoA_like 5..179 CDD:206662 35/154 (23%)
Rhobtb3NP_001101115.1 P-loop containing Nucleoside Triphosphate Hydrolases 34..174 CDD:476819 28/123 (23%)
BTB1_POZ_RHOBTB3 236..393 CDD:349666
BTB2_POZ_RHOBTB3 410..519 CDD:349669
BACK_RHOBTB3 529..611 CDD:350607
Blue background indicates that the domain is not in the aligned region.

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