DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rho1 and Rnd2

DIOPT Version :9

Sequence 1:NP_477098.1 Gene:Rho1 / 36775 FlyBaseID:FBgn0014020 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_001010953.1 Gene:Rnd2 / 303553 RGDID:1306172 Length:228 Species:Rattus norvegicus


Alignment Length:193 Identity:90/193 - (46%)
Similarity:134/193 - (69%) Gaps:7/193 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL 69
            |.|:|:|||..||||.||.||:||.:|..|||||||||.|..|:|.:::||.:|||:|...||.:
  Rat     7 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNV 71

  Fly    70 RPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAKM 134
            |||:|||:|.:|:||.:..|::|:::.:||..|.:.||||..::|||.|.|:|.|..|:|:|:|.
  Rat    72 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQ 136

  Fly   135 KQEPVKPQEGRAMAEKINAFAYLECSAKSKE-GVRDVFETATRAAL------QVKKRKKTRCL 190
            :..||..::|..:|:::.|.:|:|||::|.| .|||||..||.|:|      |:::....|.|
  Rat   137 RLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGGHRQLRRTDSRRGL 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rho1NP_477098.1 RhoA_like 5..179 CDD:206662 86/174 (49%)
Rnd2NP_001010953.1 P-loop_NTPase 7..228 CDD:304359 90/193 (47%)
RHO 10..182 CDD:197554 84/171 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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