DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rho1 and rho5

DIOPT Version :9

Sequence 1:NP_477098.1 Gene:Rho1 / 36775 FlyBaseID:FBgn0014020 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_593631.1 Gene:rho5 / 2542013 PomBaseID:SPAC20H4.11c Length:200 Species:Schizosaccharomyces pombe


Alignment Length:200 Identity:135/200 - (67%)
Similarity:163/200 - (81%) Gaps:8/200 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTT-IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 64
            ||| :|:|||||||||||||||||||||..||||||||||||||||:||||:.:|||||||||||
pombe     1 MTTELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQE 65

  Fly    65 DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIR 129
            ||||||||||||:.|:|:|||||:|:||:|:.|||..||.|||.|:||:|||.|.||||||.||.
pombe    66 DYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIE 130

  Fly   130 DLAKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAAL-------QVKKRKKT 187
            :|:|..|:|:..:||:.:|:||.|:.|||||||..|||.:|||||.||::       ..|.:||.
pombe   131 ELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASMLKFKPASVPKTKKKK 195

  Fly   188 RCLLL 192
            .|:||
pombe   196 HCILL 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rho1NP_477098.1 RhoA_like 5..179 CDD:206662 126/173 (73%)
rho5NP_593631.1 RhoA_like 6..180 CDD:206662 126/173 (73%)
RHO 9..182 CDD:197554 124/172 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 273 1.000 Domainoid score I322
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 285 1.000 Inparanoid score I650
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000943
OrthoInspector 1 1.000 - - otm47393
orthoMCL 1 0.900 - - OOG6_101682
Panther 1 1.100 - - O PTHR24072
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X549
TreeFam 1 0.960 - -
1110.820

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