DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rho1 and rho1

DIOPT Version :9

Sequence 1:NP_477098.1 Gene:Rho1 / 36775 FlyBaseID:FBgn0014020 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_594490.1 Gene:rho1 / 2541612 PomBaseID:SPAC1F7.04 Length:202 Species:Schizosaccharomyces pombe


Alignment Length:200 Identity:138/200 - (69%)
Similarity:163/200 - (81%) Gaps:9/200 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TTIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
            |.:|:|||||||||||||||||||||..||||||||||||||||:||||:.||||||||||||||
pombe     3 TELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67

  Fly    67 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIRDL 131
            ||||||||||:.|||:||:|||||||:|:.|||..||.|||.::||:||..|.||||||..|.:|
pombe    68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRNDPKIIEEL 132

  Fly   132 AKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATRAALQVKK---------RKKT 187
            :|..|.||..:||:|:|:||.|:.|||||||:.||||:|||:|||||:...|         :||.
pombe   133 SKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAMLKHKPKVKPSSGTKKKK 197

  Fly   188 RCLLL 192
            ||:||
pombe   198 RCILL 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rho1NP_477098.1 RhoA_like 5..179 CDD:206662 129/173 (75%)
rho1NP_594490.1 RhoA_like 6..180 CDD:206662 129/173 (75%)
RHO 9..182 CDD:197554 128/172 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 273 1.000 Domainoid score I322
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 285 1.000 Inparanoid score I650
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000943
OrthoInspector 1 1.000 - - otm47393
orthoMCL 1 0.900 - - OOG6_101682
Panther 1 1.100 - - LDO PTHR24072
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1096
SonicParanoid 1 1.000 - - X549
TreeFam 1 0.960 - -
1211.850

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