DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8414 and GRC3

DIOPT Version :9

Sequence 1:NP_611084.2 Gene:CG8414 / 36774 FlyBaseID:FBgn0034073 Length:995 Species:Drosophila melanogaster
Sequence 2:NP_013065.1 Gene:GRC3 / 850624 SGDID:S000003958 Length:632 Species:Saccharomyces cerevisiae


Alignment Length:608 Identity:133/608 - (21%)
Similarity:241/608 - (39%) Gaps:110/608 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   377 LIIEEIFDDPPVEKKQERIEQSSVMDIVVKNLSSVPPKKESEVAIETEENDEVSLPEVVTPEKEN 441
            ::|:...|.|...|.......|...:..:....|:|..|.:.|.:.:||.::         ::.:
Yeast     1 MVIDSKQDLPQYTKDSGSESDSDSSNNFIVESPSIPSSKSATVVLNSEEYED---------DEGD 56

  Fly   442 YLQPSDVPFYRNPQANPTELSVFENSLKSNHVLAVIKEDLEVYGTLVLTLLCGQISVNG--YRAR 504
            .|...|.....|......|.......||.       |:.|.:.|...|.::.|.|..|.  |.|.
Yeast    57 DLNGLDAELIDNITYEGDEDETMFVGLKE-------KQKLHLSGVFRLQVVKGGIVYNNVHYNAS 114

  Fly   505 RQEAITIYSPKGLNWVSISPTKTKKPVKDEVNWEELNKNFTRAQLDRIKTSFQR-QTNAIVLLHR 568
            | |.:|.:.|       :|.:...........|::   .|...:.:|.|...:. ::...||...
Yeast   115 R-EILTFWHP-------LSQSIPTIDFSHFAGWQD---TFFMPRNNRFKIRDEEFKSFPCVLRVF 168

  Fly   569 NTSAQQLVDTFGKHMAQNVFPLVNSSNRPFGQSETLLHCLIQSSDQSRTLQVPQVWN----KLQM 629
            |::...|::  ..|:.::|..|.......|..:|...:.|:..||:.::|.||..|:    ||.:
Yeast   169 NSNHTGLLE--AGHLYRDVNYLWKPKEPYFPLNERTTYHLLHESDRIQSLSVPGYWSTPLEKLYL 231

  Fly   630 -HAT----SRIIVAGGKGVGKSSLLRYLINR-------NLGQFPSMLLIDLDIGQPEIFVPQTIS 682
             |..    :||:|.|||..|||:.||.|:.:       :......::.:|||.||||..:|.:||
Yeast   232 SHKNAAYDTRIMVIGGKNSGKSTFLRLLLEKFTQDIRDSTTSQEELVYLDLDPGQPEYSLPDSIS 296

  Fly   683 CT-VIDEPL-LGPGFLY--NRQPEHAIVVGH-------TNIVLCAEQYARAVIQLVQNIQNDAKY 736
            .. ::..|: ||.....  |.|.......|.       |:.:.||:       :|:.:::..|.:
Yeast   297 LNKILSSPISLGQHLCQGSNFQTLLQFYAGSSSPQDEPTSYLNCAD-------KLIDHLEEQAFF 354

  Fly   737 SNIPWLINTMGYNKGFGIELMALLVDRIRPTDLVQIASPIPINNFDSVLDRNSLSQIKPIIYSAE 801
            ...  |:|..|:.||||::::..::.:.:||.|:.:.:.....:.|.:....|.|......|:.|
Yeast   355 GTS--LLNLPGWIKGFGMQILNHIIRKYKPTHLLFLETANSKRHLDELTIPQSFSTSLRDAYAPE 417

  Fly   802 EFKINEIPKYTL-HKLISAVPAREKGTWSLSAK-------DMRYSNLLARLSSCLT-GNAKS--- 854
               :..:|.::| |.|.|...|.:..|:.:.|.       |..::.||......:: |..||   
Yeast   418 ---VVRVPAHSLNHTLSSRFHASQLRTFKILALFHKITQFDYDFAPLLKSAPLQISYGKGKSGIK 479

  Fly   855 -------LTDCQPLGV--SLESLKILHPTSKNYSREELIRGMEANVVYLCHHGAGLPQC------ 904
                   ..|..|..:  :||...|...|   ||.|:.:.....|...:      |..|      
Yeast   480 GIQFPMEFQDLNPQDIKSALEGTVIGIYT---YSGEDSLEVKSLNTFPI------LQSCTSSSKN 535

  Fly   905 -LGIGVVRAIDYERK--ELYLVP 924
             :.:|::.:||..::  .:|:.|
Yeast   536 FITLGLIHSIDTSQQIMNIYVPP 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8414NP_611084.2 HC2 41..>163 CDD:284736
RNA_pol_3_Rpc31 <255..333 CDD:288542
P-loop_NTPase 639..824 CDD:304359 51/203 (25%)
GRC3NP_013065.1 Grc3 163..610 CDD:224260 98/419 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346371
Domainoid 1 1.000 49 1.000 Domainoid score I2966
eggNOG 1 0.900 - - E1_COG1341
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005089
OrthoInspector 1 1.000 - - oto99534
orthoMCL 1 0.900 - - OOG6_103124
Panther 1 1.100 - - LDO PTHR12755
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R523
SonicParanoid 1 1.000 - - X3611
TreeFam 00.000 Not matched by this tool.
1110.770

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