DRSC/TRiP Functional Genomics Resources

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Protein Alignment SP2353 and Lama3

DIOPT Version :10

Sequence 1:NP_611082.2 Gene:SP2353 / 36771 FlyBaseID:FBgn0034070 Length:1361 Species:Drosophila melanogaster
Sequence 2:NP_001380677.1 Gene:Lama3 / 307582 RGDID:628776 Length:3333 Species:Rattus norvegicus


Alignment Length:924 Identity:191/924 - (20%)
Similarity:312/924 - (33%) Gaps:289/924 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 EPEEAAFQGHCGHTSPCEQLCYEIHDGMYECDCIEGYELNKNGYSCQ------VINATSNSLDGR 95
            :||:|.|  :.|...|..:|...:....|: .|||..:||:|..|..      .:|.|......|
  Rat  2531 DPEDAVF--YVGGYPPDFELPSRLRFPPYK-GCIELDDLNENVLSLYNFKTTFNLNTTEVEPCRR 2592

  Fly    96 GKSDEDVLYQKGASFSAKLANDDGGKSMAKSTFALSAAQSASPAGN---------ENGEDESGSE 151
            .|.:.|..|.:|..                  :|....|..:|..|         :.|.......
  Rat  2593 RKEESDKNYFEGTG------------------YARIPTQPNAPFPNFIQTIQTTVDRGLLFFAEN 2639

  Fly   152 GDSYDYGELEDS--------NSETQEQK--QKSLNLQQQQ---------QQQQKVNSND------ 191
            .|::....:||.        |||..::|  :.::|..:..         |::..:|.|:      
  Rat  2640 QDNFISLNIEDGNLMVRYKLNSEPPKEKGIRDTINDGKDHSILITIGKLQKRMWINVNERSVRIE 2704

  Fly   192 --------YYISAESI----NFN----------------------SESEGQEQQDVADFKAASTM 222
                    ||:....|    .||                      :::.|..::...|:|...|.
  Rat  2705 GEIFDFSTYYLGGIPIAIRERFNISTPAFQGCMKNLKKTSGVVRLNDTVGVTKKCSEDWKLVRTA 2769

  Fly   223 LPS----------SVPPTPSRSTTRATAS----TTTTTTTTRRSPTRAPKQRVDVDYG--EGDGS 271
            ..|          .||     ||.|...|    |...:.|.....||.....|.::.|  |....
  Rat  2770 SFSRGGQMSFTNLDVP-----STDRFQLSFGFQTFQPSGTLLNHQTRTSSLLVTLEDGHIELSTR 2829

  Fly   272 DDYSYSYKS----------DMSVYDDVNNNQL-----NLRRNSKSQTYQQTSNTNTAKNRR---- 317
            |.....:||          .:||..|.:..:|     .||||.:..::     :|..::.|    
  Rat  2830 DSNIPIFKSPGTYMDGLLHHVSVISDTSGLRLLIDDQVLRRNQRLPSF-----SNAQQSLRLGGG 2889

  Fly   318 KYPNVTSNKVQMHITR--ETNRLENISAAEPAVVGAA---------------------------M 353
            .:....||.:....::  |...|.:.|..:.|.:|..                           :
  Rat  2890 HFEGCISNVLVQRFSQSPEVLDLASKSTKKDASLGGCSLNKPPFLMLFKSPKRFNKGRIFNVNQL 2954

  Fly   354 TTDRSTPTCNLDCGSDGICALEA--TAASSRCLCPFGKTGNGCQEDIRAHVPRFAKRSWLAFPAL 416
            ..|....|.:.:...||...|..  |.||.|.| .||.:                       |..
  Rat  2955 MQDAPQATRSTEAWQDGRSCLPPLNTKASHRAL-QFGDS-----------------------PTS 2995

  Fly   417 HGAYK--------HVQLRIEFRPESFDGIILLSGERDDLTGDFMALLLNKGFVEFWFDCGSGVGS 473
            |..:|        ..|..::.:..|..|::..:|.:|    .|:||.:..|.|.|....|.....
  Rat  2996 HLLFKLPQELLKPRSQFSLDIQTTSPKGLVFYTGTKD----SFLALYVADGRVVFALGAGGKKLR 3056

  Fly   474 VRSRETILLNEWNSVIIYRHRWDAWLVLNHGTKVQGRSNGLFSRITFREPVFLGGIGNITGLAKR 538
            :||:|.....:|::|:...:...|.||:: |.:.|..|....|.|:.||.|:||           
  Rat  3057 LRSKERYHDGKWHTVVFGLNGGKARLVVD-GLRAQEGSLPGNSTISPREQVYLG----------- 3109

  Fly   539 LPLA--------EGFAGCIRRFVANEHDYKFTEHPLGDVINGFDIQDC---STDKCVRYPCQHGG 592
            |||:        ..|.||:|       |::....||......|.:..|   |.:|.: |..|.||
  Rat  3110 LPLSRKPKSLPQHSFVGCLR-------DFQLNSKPLDSPSARFGVSPCLGGSLEKGI-YFSQGGG 3166

  Fly   593 KCLPSDQGAICLCPIGFVGDLCEIRMDLQVPAFNGSSFLRYAPLGDSALIWLELKVT--LKPEQA 655
            ..:                                        |.:|..:..|||:|  ::|...
  Rat  3167 HVI----------------------------------------LANSVSLGPELKLTFSIRPRSL 3191

  Fly   656 DGLILYSGPEHRGDFIALYLNDGFV--EFAFDLGSGPALVRSEHSLSLGQWHTIKISRTARLAVL 718
            .|::::.|.: .|..:::|:..|.|  ..:.|.|.....:..:.||..||||::.:|...|:..|
  Rat  3192 TGVLIHVGSQ-SGQRLSVYMEAGKVTTSVSSDAGGSVTSITPKQSLCDGQWHSVAVSIKQRILHL 3255

  Fly   719 KVDKHQEVLTISSNGFWHLSLDQNLFVGGVNHVDRLP-LDLKYKPFFVGCIQRIDINGHSLGI-- 780
            ::|.... .|::...|...|...:|.||||  .|:|. |.|.....|.||::.|.:|...:.|  
  Rat  3256 ELDTDSS-YTVAPLSFSPNSTRGSLHVGGV--PDKLKMLTLPVWNSFFGCLKNIQVNHVPVPITE 3317

  Fly   781 VAEALGGSNIGNCP 794
            ..|..|..::..||
  Rat  3318 ATEVQGSVSLNGCP 3331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SP2353NP_611082.2 FXa_inhibition 53..82 CDD:464251 8/28 (29%)
LamG 404..555 CDD:238058 40/166 (24%)
EGF 583..612 CDD:394967 4/28 (14%)
LamG 625..774 CDD:238058 41/153 (27%)
LamG 1205..1340 CDD:214598
Lama3NP_001380677.1 LamNT 42..293 CDD:214532
EGF_Lam 294..340 CDD:238012
EGF_Lam 351..419 CDD:238012
EGF_Lam 421..461 CDD:238012
Laminin_EGF 487..534 CDD:395007
EGF_Lam 531..573 CDD:238012
Laminin_EGF 627..677 CDD:395007
EGF_Lam 680..723 CDD:238012
Laminin_EGF 1265..1313 CDD:395007
EGF_Lam 1310..1353 CDD:238012
EGF_Lam 1355..1400 CDD:238012
EGF_Lam 1403..1453 CDD:238012
Laminin_B 1517..1651 CDD:459652
EGF_Lam 1685..1731 CDD:238012
EGF_Lam 1733..1784 CDD:238012
Laminin_I 1846..2103 CDD:310534
Smc <1964..>2283 CDD:440809
Laminin_II 2287..2415 CDD:368703
LamG 2434..2569 CDD:214598 13/40 (33%)
LamG 2601..2741 CDD:238058 23/157 (15%)
LamG 2768..2900 CDD:238058 30/141 (21%)
LamG 2992..3134 CDD:238058 41/187 (22%)
LamG 3158..3309 CDD:238058 45/195 (23%)
Blue background indicates that the domain is not in the aligned region.

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