DRSC/TRiP Functional Genomics Resources

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Protein Alignment SP2353 and Lamb3

DIOPT Version :10

Sequence 1:NP_611082.2 Gene:SP2353 / 36771 FlyBaseID:FBgn0034070 Length:1361 Species:Drosophila melanogaster
Sequence 2:NP_001094311.1 Gene:Lamb3 / 305078 RGDID:1562668 Length:1172 Species:Rattus norvegicus


Alignment Length:213 Identity:47/213 - (22%)
Similarity:75/213 - (35%) Gaps:53/213 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 TTRATASTTTTTTTTRRS----PTRAPKQRVDVDYGEGD-GSDDYSYS-----YKSDMSVYDDVN 289
            |.|..|.......:.||:    |...|.:. :::...|| |:.|.|::     |:|....::.::
  Rat   645 TERDVAQVANAILSIRRTLQGLPLDLPLEE-EMESFSGDLGNLDRSFNRLLLMYRSKKEQFEKLS 708

  Fly   290 N-------NQLNLRRNSKSQTYQQTSNTNTAKNRRKYPNVTSNKVQMHITRETNRLENISAAEPA 347
            :       ..|.:.....|:..||.|::::..::.:           ...||...||. ...|..
  Rat   709 SVDPSGAFRMLTMAYEQSSRAAQQVSDSSSLLSQLR-----------DSRREVEGLER-QTGEGG 761

  Fly   348 VVGAAMTTDR--------STPTCNLDCGSDGICALEATAASSRC---LCPFGKTGNGCQEDIRAH 401
            ..||.:...|        .|||.|..||.    :.:.......|   ||| ...|..|....|..
  Rat   762 AGGAQLMALRLEMASLPDLTPTINKLCGG----SRQTACTPGDCPGLLCP-QDNGTACGSHCRGA 821

  Fly   402 VPRFAKRSWLAFPALHGA 419
            :||       |..|||.|
  Rat   822 LPR-------ARGALHMA 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SP2353NP_611082.2 FXa_inhibition 53..82 CDD:464251
LamG 404..555 CDD:238058 6/16 (38%)
EGF 583..612 CDD:394967
LamG 625..774 CDD:238058
LamG 1205..1340 CDD:214598
Lamb3NP_001094311.1 Laminin_N 21..249 CDD:470680
EGF_Lam 250..305 CDD:238012
Laminin_EGF 317..367 CDD:395007
Laminin_EGF 380..429 CDD:395007
EGF_Lam 431..480 CDD:238012
Laminin_EGF 482..535 CDD:395007
EGF_Lam 535..572 CDD:214543
SMC_prok_B <834..1115 CDD:274008
cc_LAMB_C 1102..1172 CDD:424069
Blue background indicates that the domain is not in the aligned region.

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