DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SP2353 and lamb4

DIOPT Version :10

Sequence 1:NP_611082.2 Gene:SP2353 / 36771 FlyBaseID:FBgn0034070 Length:1361 Species:Drosophila melanogaster
Sequence 2:NP_775383.2 Gene:lamb4 / 286831 ZFINID:ZDB-GENE-021226-2 Length:1827 Species:Danio rerio


Alignment Length:751 Identity:131/751 - (17%)
Similarity:213/751 - (28%) Gaps:303/751 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 CRVVCVWLLLVLSSLSSASIAVGAIPEPEEAAFQGHCGHTSPCEQLCYEIHDGMYECD-CIEGY- 73
            ||  |.:|         .:|.||...:|.    .|.|    .||...|.     .:|| |:.|| 
Zfish   449 CR--CNFL---------GTIQVGNPCDPT----TGRC----ICEHFAYG-----SQCDQCLPGYW 489

  Fly    74 ELNKNGYSC--------QVINATSNSLDGRGKSDEDVLYQKGASFSAKLANDDG-GKSMAKSTFA 129
            .|....|.|        ..:....:|:||:.|...:::.||        .||.. |..:|...|.
Zfish   490 GLGNTVYGCIPCDCDIGGALKTECSSVDGQCKCRPNMVGQK--------CNDPAPGYFLAPLDFY 546

  Fly   130 LSAAQSASPAGNENGEDESGSEGDSYDYGELEDSNSETQEQKQKSLNLQQQQQQQQKVNSNDYYI 194
            :..|::|:|..                                                     :
Zfish   547 IYEAENAAPLA-----------------------------------------------------V 558

  Fly   195 SAESIN---FNSESEGQEQQDVADFKAASTMLPSSVPPTPSRSTTRATASTTTTTTTTRRSPTRA 256
            .:..|.   |...:||..::        .|.|| ..||.|..|:.......|.       .|:.|
Zfish   559 ISPFIGPPPFVYPTEGIPER--------PTKLP-LCPPAPKPSSVPYREHITV-------QPSPA 607

  Fly   257 P--------------KQRVDVDYGEGDGSDDYSYSYKSDMSVYDDVNNNQLNLRRNSKSQTYQQT 307
            |              :||              .|.:|        ::|.:|.:.:..|.||.:: 
Zfish   608 PHNPQVTLPMCEHYFRQR--------------GYDFK--------ISNGRLVVVKREKRQTRRR- 649

  Fly   308 SNTNTAKNRRKYPNVTSNKVQMHITRETN------------RLENISAAEPAVVGAAMTTD---- 356
                 .:.:|..|....:.:|:.:.:..|            |:::.:.....|.....|.|    
Zfish   650 -----RQGQRTIPFEPGSPLQILLRQRANDQSITWTGLGFVRVQDGAGLRFTVSNIPATLDYYVV 709

  Fly   357 -RSTPTCNLD----------------CGSDGICALEATAASSR--------CLCPFGKTGNGCQE 396
             |..|....|                |.:|....:....||.|        ||    ..||....
Zfish   710 VRYEPESTDDWTAIVSILSFGSEDERCPNDQSNKMFTLPASGRTATLDLPVCL----SDGNQYHV 770

  Fly   397 DIR--------------------------AHVPRFAKRSWLAFPALHGAYKHVQLRIEFRPESFD 435
            ||.                          ..||.|..:|:|   :....|:.::|.::...::..
Zfish   771 DITFRKQPSEDPHSSSFILIDSLGLIPKVESVPNFCSQSYL---SQFQQYRCIELAVQAGGQTLP 832

  Fly   436 GII-LLSGERDDLTGDFMALLLNKGFVE--------FWFDCGSGVGSVRSRETILLNEWNSVIIY 491
            .:. :|.|.        |:..::.|.|.        :...|....|..:.:..::          
Zfish   833 EVCEMLIGS--------MSAFIHNGAVSCNCHHVGAYGSSCSKFGGQCQCKPNVI---------- 879

  Fly   492 RHRWDAWLVLNHGTKVQGRS------NGLFSRITFREPVFLGGIGNITGLA--KRLPLAEGFAGC 548
            ....|:...|.:|....|.|      :|..:.:..:..........||||.  :..|...||..|
Zfish   880 GRCCDSCAPLTYGLGPNGCSPCDCDRSGSTTELCDQTTGQCSCRDGITGLQCNRCYPGYYGFPLC 944

  Fly   549 IRRFVAN-----------------EHD-----YKFTEHPLGDVINGFDIQDC------STDKCVR 585
             ||...|                 ||.     .:..|..:||.::|...:.|      .:.:...
Zfish   945 -RRCQCNRLADICDPITGDCLDCREHSAGRNCERCEEGYVGDPVSGQPCEPCLCPDLNGSGRFFA 1008

  Fly   586 YPCQHGGK-------CLPSDQGAIC-LCPIGFVGDL 613
            :.|....:       |||...|..| .|..||.|||
Zfish  1009 FSCNKDPRSGAPYCECLPGHTGPQCDSCSPGFYGDL 1044

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SP2353NP_611082.2 FXa_inhibition 53..82 CDD:464251 10/30 (33%)
LamG 404..555 CDD:238058 28/167 (17%)
EGF 583..612 CDD:394967 9/36 (25%)
LamG 625..774 CDD:238058
LamG 1205..1340 CDD:214598
lamb4NP_775383.2 Laminin_N 30..265 CDD:459653
EGF_Lam 266..324 CDD:238012
EGF_Lam 333..386 CDD:238012
Laminin_EGF 397..446 CDD:395007
EGF_Lam 449..498 CDD:238012 20/72 (28%)
EGF_Lam 500..>539 CDD:238012 9/46 (20%)
EGF_Lam 853..898 CDD:214543 5/54 (9%)
Laminin_EGF 901..949 CDD:395007 11/48 (23%)
EGF_Lam 946..993 CDD:238012 8/46 (17%)
EGF_Lam 994..1049 CDD:238012 13/51 (25%)
Laminin_EGF 1054..1098 CDD:395007
Laminin_EGF 1106..1165 CDD:395007
EGF_Lam 1162..1205 CDD:238012
EGF_Lam 1211..1259 CDD:238012
Domain II 1258..1449
PRK03918 <1292..1822 CDD:235175
Domain alpha 1450..1476
Domain I 1477..1827
cc_LAMB4_C 1756..1825 CDD:411972
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.