DRSC/TRiP Functional Genomics Resources

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Protein Alignment SP2353 and Lamb2

DIOPT Version :10

Sequence 1:NP_611082.2 Gene:SP2353 / 36771 FlyBaseID:FBgn0034070 Length:1361 Species:Drosophila melanogaster
Sequence 2:NP_037106.1 Gene:Lamb2 / 25473 RGDID:2988 Length:1801 Species:Rattus norvegicus


Alignment Length:465 Identity:86/465 - (18%)
Similarity:160/465 - (34%) Gaps:133/465 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 ELNKNGYSCQVINATSNSLDGRGKSDEDVLYQKGASFSAK-LANDDGGKSMAKSTFALS------ 131
            |...|..:..:.:..|||.|.|.:: |.::..:..:|:.: |||......::..|..||      
  Rat  1347 ERRANASTFAIPSPVSNSADTRRRA-EVLMGAQRENFNRQHLANQQALGRLSTHTHTLSLTGVNE 1410

  Fly   132 --------AAQSASPAG-----NENGEDESGSEGDSYDYGELEDSN------SETQEQKQKSL-- 175
                    |..:.||.|     :|:|:...|..|.|   |....::      ..||.:.|::|  
  Rat  1411 LVCGAPGDAPCATSPCGGAGCRDEDGQPRCGGLGCS---GAAATADLALGRARHTQAELQRALVE 1472

  Fly   176 ----------NLQQQQQQQQKVNSNDYYISAESINFNSESEGQ-EQ---------QDVADF---- 216
                      ..:|.::.||:..:        :::..:.|.|| ||         |:|.||    
  Rat  1473 GGGILSRVSETRRQAEEAQQRAQA--------ALDKANASRGQVEQANQELRELIQNVKDFLSQE 1529

  Fly   217 --------KAASTMLPSSVPPTPSR---------STTRATASTTTTTTTTRRSPTRAPKQRVDVD 264
                    ..|:.:|..|:|.:|.:         ...|:.|...|....|.....||.:...|..
  Rat  1530 GADPDSIEMVATRVLDISIPASPEQIQRLASEIAERVRSLADVDTILAHTMGDVRRAEQLLQDAQ 1594

  Fly   265 ------YGEGDGSDDYSYSYKSDM------------SVYDDVNNNQLNLRRNSKSQTYQQTSNTN 311
                  .||...::....:.:...            :|.|..|..|...:...:....:|:.|:.
  Rat  1595 RARSRAEGERQKAETVQAALEEAQRAQGAAQGAIRGAVVDTKNTEQTLQQVQERMAGTEQSLNSA 1659

  Fly   312 TAKNRRKYPNVTSNKVQMHITRETNRLENISAAEPAVVGAAMTTDR--------------STPTC 362
            :.:.|:.:..:.:.|::    |..|.|...:|.|.|  |:|.:..|              .|...
  Rat  1660 SERARQLHALLEALKLK----RAGNSLAASTAEETA--GSAQSRAREAEKQLREQVGDQYQTVRA 1718

  Fly   363 NLDCGSDGICALEATAASSRCLCPFGKTGNGCQEDIRAHVPRFAKRSWLAFPALHGAYKHVQLRI 427
            ..:..::|:.|.:|.|...|      ....|..:..:..:.|..:        |.|.|:..:..:
  Rat  1719 LAERKAEGVLAAQARAEQLR------DEARGLLQAAQDKLQRLQE--------LEGTYEENEREL 1769

  Fly   428 EFRPESFDGI 437
            |.:....||:
  Rat  1770 EVKAAQLDGL 1779

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SP2353NP_611082.2 FXa_inhibition 53..82 CDD:464251 2/7 (29%)
LamG 404..555 CDD:238058 7/34 (21%)
EGF 583..612 CDD:394967
LamG 625..774 CDD:238058
LamG 1205..1340 CDD:214598
Lamb2NP_037106.1 Laminin_N 50..284 CDD:459653
EGF_Lam 286..338 CDD:238012
EGF_Lam 350..402 CDD:238012
Laminin_EGF 413..470 CDD:395007
EGF_Lam 472..523 CDD:238012
EGF_Lam 524..565 CDD:238012
EGF_Lam 786..831 CDD:214543
Laminin_EGF 834..882 CDD:395007
Laminin_EGF 880..927 CDD:395007
EGF_Lam 929..987 CDD:238012
Laminin_EGF 989..>1031 CDD:395007
Laminin_EGF 1041..1095 CDD:395007
Laminin_EGF 1098..1146 CDD:395007
Laminin_EGF 1146..1193 CDD:395007
Domain II 1193..1412 15/65 (23%)
Domain alpha 1413..1445 7/31 (23%)
Domain I 1446..1801 63/365 (17%)
Smc <1448..>1793 CDD:440809 61/360 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1684..1703 6/20 (30%)
cc_LAMB2_C 1730..1801 CDD:411970 11/64 (17%)
Blue background indicates that the domain is not in the aligned region.

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