DRSC/TRiP Functional Genomics Resources

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Protein Alignment casp and UBX3

DIOPT Version :9

Sequence 1:NP_611080.1 Gene:casp / 36769 FlyBaseID:FBgn0034068 Length:695 Species:Drosophila melanogaster
Sequence 2:NP_010192.1 Gene:UBX3 / 851467 SGDID:S000002249 Length:455 Species:Saccharomyces cerevisiae


Alignment Length:436 Identity:96/436 - (22%)
Similarity:181/436 - (41%) Gaps:115/436 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   301 HRFAVRSTERSAPTNSNQHNAFDVVTVDSESSTDEFEDATDFNNAEYIFTDSPPAQPPNRHLIPN 365
            |.|..|...|....:|..|...:.:..::::.|....:.   ||.:...|||             
Yeast    88 HGFYQRKHNRLLDHSSQLHRLLENLENEAQAVTCSEGNG---NNDDGSNTDS------------- 136

  Fly   366 DTDDEISGSTQFVENYKARYGEPCPEFFVGSLENA-KQL--ACLRSAKERKLLAIYLHH------ 421
             |.:..|...||  ::.:.|......|....::|: .:|  ||   :::.|...||||.      
Yeast   137 -TSNNESSGVQF--SFGSLYNPENGTFSKSIMQNSYTELLDAC---SEQVKFGVIYLHDPLLDNH 195

  Fly   422 ----GKSILSNVFCDQLMKHESIIQTFKEKFVLYGWDMTYESNKDMFLSSLTACISSNASLTARN 482
                .|.:.|..|.:.:.|::.::        .|| |:|......:          |||      
Yeast   196 MDYVNKILCSEAFVNMIRKYQVLL--------WYG-DVTTSEGLQV----------SNA------ 235

  Fly   483 IKLDKLPAIMLVGKSRQLGSNCEVLSVIHGNIG---LDDL-------LTRLIETCEMFEEQLQVE 537
            :|:.:.|.:.::  |.:.....|:::.:.|:|.   ..||       .:|||   ::.:::..:|
Yeast   236 LKIRQYPLLGII--SLKAEKKIELIARVEGSISNYKAQDLEAIFSKNYSRLI---QLRQQRQNIE 295

  Fly   538 IRQEDERAARDQVKAEQDMAYQETLQADMAKDAAKRQKEAAQLAERKRMESERAEEDARRESIRL 602
            :::        .::.:||..||::|:.|       :|:|:.:|.:.:|.:.||  |..|.|:..|
Yeast   296 MQR--------LIRQQQDSRYQDSLRRD-------QQRESERLEQTQREQMER--EHQRIENQWL 343

  Fly   603 VAQQS-LPQEPSEQETGTSKIRVRKPTGDFLERRF-----------FINNNLQDLLN-------- 647
            :.::| |..||| .:...||:.:|...|..|.|:|           |:...|.|:||        
Yeast   344 LWRKSQLKPEPS-SDKDASKVAIRLENGQRLVRKFDASLPTEEIYAFVELQLHDMLNSENDTLPV 407

  Fly   648 FVTANGFLIEEYKLISSWPRRDLTAIESSQTLESLKLYPQETVILE 693
            :..||......:|||:..|||:|..  |::..:...:||...:::|
Yeast   408 YQPANYQHQYSFKLITPVPRRELDL--STKISDVSGIYPSGNIVME 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caspNP_611080.1 UBA_FAF1 12..44 CDD:270596
UBL 148..>182 CDD:176364
UAS_FAF1 392..530 CDD:239288 32/160 (20%)
Faf1_UBX 616..695 CDD:176366 25/97 (26%)
UBX3NP_010192.1 UAS 151..274 CDD:214737 29/152 (19%)
DUF5401 <271..>360 CDD:375164 27/109 (25%)
UBX 357..452 CDD:395637 25/97 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157345983
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1363
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23322
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2328
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.870

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