DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8399 and si:ch73-196i15.3

DIOPT Version :10

Sequence 1:NP_001286472.1 Gene:CG8399 / 36768 FlyBaseID:FBgn0034067 Length:656 Species:Drosophila melanogaster
Sequence 2:NP_001315196.1 Gene:si:ch73-196i15.3 / 108004537 ZFINID:ZDB-GENE-091116-4 Length:270 Species:Danio rerio


Alignment Length:187 Identity:49/187 - (26%)
Similarity:75/187 - (40%) Gaps:44/187 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 TMLPF---HSGGSVLPQN--------------------SVSPFSVETSSSTLGQGQTLRVDLTGV 83
            |||.|   :|.||:|..:                    :|:|..|...||.:|.|.|:.:..:  
Zfish    15 TMLRFICCYSDGSLLTDHCQSMAIDHGAQASGQDSNPFTVAPDYVIVDSSQVGTGITVTLSAS-- 77

  Fly    84 PAGLSFGGYMIQARNRN--PPHQIIGQFGPARDGTIKLMNCENSVNNSATHSNAGPKQQVILEWQ 146
             :| ||.|:|::||..:  ||   .|.|......::.|  |...|   ..||.:..|..|.:.|.
Zfish    78 -SG-SFMGFMLEARECDDCPP---AGSFSVLDFNSLLL--CSGQV---VAHSLSSDKSSVQVTWT 132

  Fly   147 SPVDFLGQVVFNATIAQSYNEFWVGVPSQPVQIVRRDLSAAPPLPTQSPSAPAGTTR 203
            ...  .||..|.|...:::.|||.     ...|:....:.:||..|...:.|..||:
Zfish   133 PQA--TGQFFFRAAFVKNFIEFWT-----KKAIILSTTTTSPPTTTLMTTTPQTTTQ 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8399NP_001286472.1 Reeler 40..170 CDD:460411 41/152 (27%)
DOMON_SDR_2_like 223..392 CDD:187686
Cyt_b561_FRRS1_like 358..553 CDD:176490
si:ch73-196i15.3NP_001315196.1 Reeler 33..154 CDD:460411 33/134 (25%)
Blue background indicates that the domain is not in the aligned region.

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