DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Rrp42 and RRP42

DIOPT Version :9

Sequence 1:	NP_725517.2	Gene:	Rrp42 / 36766	FlyBaseID:	FBgn0034065	Length:	296	Species:	Drosophila melanogaster
Sequence 2:	NP_010172.1	Gene:	RRP42 / 851447	SGDID:	S000002269	Length:	265	Species:	Saccharomyces cerevisiae

Alignment Length:	244	Identity:	63/244 - (25%)
Similarity:	122/244 - (50%)	Gaps:	34/244 - (13%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 VALSEAEKTYILHGVED--DFRCDGRSRRDYRPMDLETGLVSNASGSARLRLAN-TDILVGVKTE 65
            ::||.|||:|:...:..  ..|.|||....:||:::.|..:.:::||:|:..:: ::.:|.:|::
Yeast     1 MSLSVAEKSYLYDSLASTPSIRPDGRLPHQFRPIEIFTDFLPSSNGSSRIIASDGSECIVSIKSK 65

  Fly    66 I---DVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQN-AYESPLAFNYRTLCL 126
            :   .|.|.|      |:..||.:        |:....|..|.|.||.| ..:|....:...|.|
Yeast    66 VVDHHVENEL------LQVDVDIA--------GQRDDALVVETITSLLNKVLKSGSGVDSSKLQL 116

  Fly   127 IPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNP----Y 187
            .. :..:|:::|:|::....:....:|.|..:||.:|.||:     |.:...||.:.:.|    |
Yeast   117 TK-KYSFKIFVDVLVISSHSHPVSLISFAIYSALNSTYLPK-----LISAFDDLEVEELPTFHDY 175

  Fly   188 DCTRIGIETVPLLVTVCKIGDYVLVDPSAEEEVCSTVSMVVSVSMRNGQ 236
            |..::.|.. ||:..:..:|:.:|:||:|.|...:...:::|.|  ||:
Yeast   176 DMVKLDINP-PLVFILAVVGNNMLLDPAANESEVANNGLIISWS--NGK 221

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rrp42	NP_725517.2	RNase_PH_RRP42	5..278	CDD:206772	63/243 (26%)
Rrp42	NP_725517.2	Rrp42	6..277	CDD:225034	63/242 (26%)
RRP42	NP_010172.1	RNase_PH_RRP42	2..264	CDD:206772	63/243 (26%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C157346700
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG2123
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0	Normalized mean entropy	S2208
OMA	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0001408
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	LDO	PTHR11097
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1219
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	8	7.780