DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ATPCL and LSC2

DIOPT Version :9

Sequence 1:NP_001137674.2 Gene:ATPCL / 36760 FlyBaseID:FBgn0020236 Length:1112 Species:Drosophila melanogaster
Sequence 2:NP_011760.3 Gene:LSC2 / 853159 SGDID:S000003476 Length:427 Species:Saccharomyces cerevisiae


Alignment Length:456 Identity:107/456 - (23%)
Similarity:166/456 - (36%) Gaps:112/456 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSAKAITEASGKDILNRHLNTHG-AGAATCRFSTVNSTTDWSKLAVDHPW-----LLTTPLVCKP 59
            ::|:|..:|      .|||:.|. ..|...|...:.:...:.....:..:     |.|..||.|.
Yeast    19 LNAQAALQA------RRHLSIHEYRSAQLLREYGIGTPEGFPAFTPEEAFEAAKKLNTNKLVIKA 77

  Fly    60 DQLIKRRGK----------LGLIGVKKNFEQVKQWIGERLNKDQKIGNAVGKLRNFIIEP----- 109
            ..|...|||          :.:|...:..|.|.:   |.||.     |.:.|......:|     
Yeast    78 QALTGGRGKGHFDTGYKSGVHMIESPQQAEDVAK---EMLNH-----NLITKQTGIAGKPVSAVY 134

  Fly   110 FVPHTDAE-EMYVCIYSHRAA--DTILFYHQGGVDIGDV-----DA-KAVKLDVPVNSSLSLADV 165
            .|...|.: |.|:.|...|..  ..|:...|||::|.:|     || |...::.....|..:|..
Yeast   135 IVKRVDTKHEAYLSILMDRQTKKPMIIASSQGGMNIEEVAERTPDAIKKFSIETSKGLSPQMAKD 199

  Fly   166 KSKLLKEVKDAGTKERIAKFVSALYTTYVDLYFTYLEINPLVVTADNLYILDLAAKLDSTADFIC 230
            .:|.|....||  ::..||.||.||..:::...|.:|||||                        
Yeast   200 VAKSLGFSPDA--QDEAAKAVSNLYKIFMERDATQVEINPL------------------------ 238

  Fly   231 RPKWGEIDYPP---------PFGRD---AYPEEAYIA-------DLDAKSGASLKLTILNRNGRI 276
                .||::.|         .||.|   ::.:|...:       |.|........|..:...|.|
Yeast   239 ----SEIEHDPTHKIMCTDAKFGFDDNASFRQEKIYSWRDLSQEDPDEVKAKKYDLNFVKLKGNI 299

  Fly   277 WTMVAGGGASVIYSDTICDLGGASELANYGEYSGAPSEQQTYEYAKTILNLMTSSPKHPDGKVLI 341
            ..:|.|.|.::...|.|...||  :.||:.:..|..:.:...:..:.||     |.|:.|...:.
Yeast   300 GCLVNGAGLAMATMDVIKLNGG--DPANFLDCGGGATPETIKQGFELIL-----SNKNVDAIFVN 357

  Fly   342 TGGGIANFTNVAATFQGIITALREFQPKLVEHNVSIFVRRAGPNYQEGLRKMRDFGSTLGIPLHV 406
            ..|||.....||.   |::.|.||     :|..|.|..|..|...:||    ||..:..|:.::.
Yeast   358 IFGGIVRCDYVAL---GLVEAARE-----LEVRVPIVARLQGTKVEEG----RDIINKSGVKIYS 410

  Fly   407 F 407
            |
Yeast   411 F 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPCLNP_001137674.2 PLN02235 1..421 CDD:177879 107/456 (23%)
ATP-grasp_4 8..208 CDD:302634 58/229 (25%)
Citrate_bind 248..423 CDD:292732 41/167 (25%)
PLN02522 503..1106 CDD:178137
CoA_binding 504..613 CDD:214881
Ligase_CoA 672..796 CDD:304578
CCL_ACL-C 868..1105 CDD:99854
LSC2NP_011760.3 sucC 33..424 CDD:234813 101/436 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0045
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.