DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ATPCL and sucg-1

DIOPT Version :9

Sequence 1:NP_001137674.2 Gene:ATPCL / 36760 FlyBaseID:FBgn0020236 Length:1112 Species:Drosophila melanogaster
Sequence 2:NP_501266.1 Gene:sucg-1 / 177555 WormBaseID:WBGene00016844 Length:415 Species:Caenorhabditis elegans


Alignment Length:420 Identity:105/420 - (25%)
Similarity:176/420 - (41%) Gaps:76/420 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ITEASGKDILNRHLNTHGAGAATCRFSTVNSTTD----WSKLAVDHPWLLTTPLVCKPDQLIKRR 66
            :.|...|:||.:|      |.:...|...::..:    |.... ||.:      |.|...|...|
 Worm    22 LQEFQSKEILEKH------GCSVQNFVVASNRKEAEEKWMSFG-DHEY------VVKAQILAGGR 73

  Fly    67 GK---------LGLIGVKKN----FEQVKQWIGERLNKDQKIGNAVGKLRNFIIEPFVPHTDAE- 117
            ||         :|.:.:.|.    .|.:.:.||:||...|.....|...:..|.|    ..|.: 
 Worm    74 GKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKVMIAE----GVDIKR 134

  Fly   118 EMYVCIYSHRAAD--TILFYHQGGVDIGDVDAKAVK--LDVPVNSSLSLADVKSKLLKEVKDAGT 178
            |.|:.:...|.::  .::....||:||..|..|..:  ...|::..:.:.:.:|  ||..||...
 Worm   135 ETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMTEGQS--LKIAKDLQF 197

  Fly   179 KERI----AKFVSALYTTYVDLYFTYLEINPLVVTAD-NLYILDLAAKLDSTADFICRPKWGEID 238
            :.::    |:.:..||..::.:..|.:||||||.||| .::.:|.....|.:|.:  |.|  || 
 Worm   198 EGKLIGVAAQEIKRLYDLFIAVDATQVEINPLVETADGRVFCVDAKMNFDDSAAY--RQK--EI- 257

  Fly   239 YPPPFGRDAYPEEAYIADLDAKSGASLKLTILNRNGRIWTMVAGGGASVIYSDTICDLGGASELA 303
                |..:.: ||....::||.   ...|..:..:|.|..:|.|.|.::...|.|...||  |.|
 Worm   258 ----FAYETF-EEHDPREVDAH---QFNLNYIGMDGNIACLVNGAGLAMATMDLIKLHGG--EPA 312

  Fly   304 NYGEYSGAPSEQQTYEYAKTILNLMTSSPKHPDGKVLIT-GGGIANFTNVAATFQGIITALREFQ 367
            |:.:..||.:|...:    ..:.::||.|:..  .|||. .|||.|...:|   .|:::|:.:  
 Worm   313 NFLDVGGAVTEDAVF----NAVRIITSDPRVK--CVLINIFGGIVNCATIA---NGVVSAVNK-- 366

  Fly   368 PKLVEHNVSIFVRRAGPNYQEGLRKMRDFG 397
               :..||.:.||..|.|.....:.|:..|
 Worm   367 ---IGLNVPMVVRLEGTNVDAAKQIMKKSG 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPCLNP_001137674.2 PLN02235 1..421 CDD:177879 105/420 (25%)
ATP-grasp_4 8..208 CDD:302634 52/225 (23%)
Citrate_bind 248..423 CDD:292732 41/151 (27%)
PLN02522 503..1106 CDD:178137
CoA_binding 504..613 CDD:214881
Ligase_CoA 672..796 CDD:304578
CCL_ACL-C 868..1105 CDD:99854
sucg-1NP_501266.1 sucC 21..410 CDD:234813 105/420 (25%)
ATP-grasp_2 21..231 CDD:285620 52/227 (23%)
Ligase_CoA 290..410 CDD:278948 34/120 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0045
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.