DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8320 and snd2

DIOPT Version :10

Sequence 1:NP_611072.2 Gene:CG8320 / 36759 FlyBaseID:FBgn0034059 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_593272.1 Gene:snd2 / 2543218 PomBaseID:SPAC56E4.05 Length:192 Species:Schizosaccharomyces pombe


Alignment Length:181 Identity:39/181 - (21%)
Similarity:84/181 - (46%) Gaps:25/181 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 KQIVEENKTTLTFYRNMAIGCAAPAL--LLSFLVFE-VTKTSVFMHILSLLILGSSYQFMAFMSQ 76
            |::..:||..|||.  :|.......|  :|.|.|.. ::|.|.|::..:.:..|..:..:...:.
pombe     7 KKLAAQNKHILTFM--LAADLIVNVLFWILRFFVRSGLSKFSKFVYAFASISSGFLHYQLHRAAA 69

  Fly    77 AKYSESGALLDSGNDLNMEGGIAENVKDLIILTSGTLLLALISN-----YFWLVLLLAPIRAGWM 136
            .||...|:||..|.|| ::.|:...:.|.:..:...:.||.:::     ::.||.:....:|..:
pombe    70 PKYDARGSLLYVGQDL-LQEGVTSYMVDYMYFSWILIFLAALTSVKVFAFYLLVPIFVVYKAAPL 133

  Fly   137 LWGSVIQPWLSQRN-AQDDNPQVDEKKQKK------------MDRRMRRMR 174
            | ..::|...:.:| |.:..||..:::|::            :.:|.:::|
pombe   134 L-KMLLQQLKNFKNQALNQPPQQQQQQQQQQHQQHATPSEPVLSKRQQKLR 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8320NP_611072.2 TMEM208_SND2 9..166 CDD:428546 37/171 (22%)
snd2NP_593272.1 TMEM208_SND2 1..187 CDD:428546 39/181 (22%)

Return to query results.
Submit another query.