DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Strn-Mlck and Nexn

DIOPT Version :9

Sequence 1:NP_001261019.1 Gene:Strn-Mlck / 36753 FlyBaseID:FBgn0265045 Length:8255 Species:Drosophila melanogaster
Sequence 2:NP_001344135.1 Gene:Nexn / 68810 MGIID:1916060 Length:671 Species:Mus musculus


Alignment Length:825 Identity:174/825 - (21%)
Similarity:324/825 - (39%) Gaps:214/825 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  4615 SQKEEVKDSEAKPKKAKVLEKKSIEEEKLEDKKEKQTESAIDEKSQKAEVSEIVSEKITDEKAQE 4679
            |||.|:..|..||.....:.|  :.:..::||.|.. :.|.:|::|:         :..|||.: 
Mouse     5 SQKAEILLSSCKPVPKSYVPK--LGKGDVKDKFEAM-QRAREERNQR---------RSRDEKQR- 56

  Fly  4680 SQMEEVKDSEAKPKKAKVLEKKSIEEAKLEDKKETQTDSAIDEKSQKAEVSEIVSEKIT------ 4738
                         :|.:.:.::.....|.|.|:...:|   ||:....::.:....|:|      
Mouse    57 -------------RKEQYIREREWNRRKQEIKEMLASD---DEEESSPKIEKAYVPKLTGTVKGK 105

  Fly  4739 -DEKAQESQKEEVKDSEAKPKK---AKVLEKKSIEE------EKLEDKKEKQTESAIDEKSQKAE 4793
             ||..:..|:|:.|.:|.:.|:   ..:|||:.|:.      |::||.....||||.:|......
Mouse   106 FDEMEKHRQEEQRKRTEEERKRRIEQDLLEKRKIQRELAKRAEQIEDINNTGTESASEEGDDSLL 170

  Fly  4794 VSEIVSEKITDEKAQESQKKEVKGSEAKPKKAKVLEKKSIEE-----EKLEDKKEKQTESAIDEK 4853
            ::.:.::                 |...|.|.|..|....||     ...|||...:.|..:   
Mouse   171 ITVVPAK-----------------SYKTPGKTKDPEDLDREEGNGRTNHEEDKMRYEEECRV--- 215

  Fly  4854 SQKAEVSEIVSEKITDEKAQESQKKEVKDSEAKPKKAKVLEKKSIEEEKLENKKEKQTESA---I 4915
            .::|:...:|.:..|:.|         |:|....|.....|:  :|.::.||:|::..|.|   :
Mouse   216 LKEAKCLSLVMDDETEAK---------KESHFPGKLKSTFEE--LERQRQENRKKQAEEEARRRL 269

  Fly  4916 DEKSQKAEVSEIVSEKITDEKAQESQKKEVKDSEAKPKKAKVLEKKSIEEEKLEDKKEKQTESAI 4980
            :|:.:..|  |.....:.:|  .|:|.:|....|.:|.|.| |..:.||.::.||:|.|..|.| 
Mouse   270 EEERRSFE--EARRHMVNEE--DENQDRETVFKEYRPGKLK-LSFEEIERQRREDEKRKAEEEA- 328

  Fly  4981 DEKFQKAEVSETVSEKITDEKA--EESRKEEVKDSEAKPKKAKVLEKKSIEEEKLE--------D 5035
                         ..:|.:|||  .|:|:..|.|.:: |:..|.:.::|:...|||        .
Mouse   329 -------------RRRIEEEKAAFAEARRSMVLDDDS-PEIYKTVSQESLTPGKLEINFEQLLRQ 379

  Fly  5036 KKEKQTESAIDEKSQKAEVSETVSEKITDEKAQESQKKE-----------VKDSEAKPKKAKILE 5089
            |.|::.....:|:..|.|:.:...|::..|..:|.::.|           :|...:...:||.|:
Mouse   380 KMEEERRRTEEERRHKLEMEKQEFEQLRQEMGKEEEENESFGLSREYEELIKLKRSGSIQAKNLK 444

  Fly  5090 KKSIEIEKLDEKKEKQTETKVATDTKSQTVEVSEIVLEKISEEKAE-ESQKVELKDSEAKSKKAK 5153
            .|..:|.:|.||:                      |.:||.||:|: .:..:|:|:.||      
Mouse   445 SKFEKIGQLSEKE----------------------VQKKIEEERAKRRAIDLEIKEREA------ 481

  Fly  5154 VLEKKSTLKEKLDENDKKQKEDGATNKSQKAEAADVVPEKISEEKVA-EIKTPEPMDSKAKSKPD 5217
                     |...|:|.                .||.|.|.||.... ::......:..||::  
Mouse   482 ---------ENFHEDDD----------------VDVRPAKKSESPFTHKVNMKARFEQMAKAR-- 519

  Fly  5218 GLPADEKSHGAKVSESVPVKNEAEKTDQLSAKKPTVLDEDLVVPKRKPYLAEQTADSISLQTYKS 5282
                 |:....::.|...::.:.|:.           :.|..:.|::....|:....::      
Mouse   520 -----EEEEQRRIEEQKLLRMQFEQK-----------EIDAALQKKREDEEEEEGSIVN------ 562

  Fly  5283 MDSEYKDRKESRSAK---RKPTVDIQLTNRNTASGSDLKLTCGLSGH-EMNVQWFKDNCPIENGA 5343
             .|..:|.:::||..   :||     |.|.:......::.|..::|. :..:.|:.:...:::|.
Mouse   563 -GSTTEDEEQTRSGAPWFKKP-----LRNTSVVDSEPVRFTVKVTGEPKPEITWWFEGEILQDGE 621

  Fly  5344 KYRRTLNDGLSCLEIKSAELGDSGIYRCIASNQNGEVETSCLVTI 5388
            .|:........||.:......|.|.|.|.|.|..|...::|::||
Mouse   622 DYQYIERGETYCLYLPETFPEDGGEYMCKAVNNKGSAASTCILTI 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Strn-MlckNP_001261019.1 IG_like 51..127 CDD:214653
Ig <69..>112 CDD:299845
I-set 137..226 CDD:254352
I-set 235..314 CDD:254352
Ig_2 244..314 CDD:290606
I-set 438..513 CDD:254352
Ig 454..510 CDD:143165
I-set 537..626 CDD:254352
Ig 555..618 CDD:299845
I-set 636..713 CDD:254352
Ig 652..712 CDD:143165
SMC_N <2190..2854 CDD:280601
I-set 5300..5388 CDD:254352 18/88 (20%)
IGc2 5313..5378 CDD:197706 13/65 (20%)
IG 5412..5482 CDD:214652
IGc2 5413..5481 CDD:197706
I-set 5542..5627 CDD:254352
Ig 5556..5621 CDD:143165
Ig 5654..5721 CDD:143165
I-set 5784..5874 CDD:254352
IGc2 5797..5864 CDD:197706
I-set 5887..5970 CDD:254352
Ig 5902..5966 CDD:143165
I-set 5997..6086 CDD:254352
Ig 6026..6083 CDD:143165
I-set 6097..6187 CDD:254352
Ig 6114..6187 CDD:299845
FN3 6216..6310 CDD:238020
I-set 6321..6412 CDD:254352
Ig 6328..6412 CDD:299845
I-set 6442..6531 CDD:254352
Ig 6459..6528 CDD:143165
I-set 6541..6632 CDD:254352
IGc2 6555..6622 CDD:197706
I-set 6662..6754 CDD:254352
Ig 6679..6751 CDD:143165
I-set 6779..6868 CDD:254352
IGc2 6793..6858 CDD:197706
Ig 6938..7022 CDD:299845
I-set 6939..7028 CDD:254352
IG 7075..7140 CDD:214652
Ig 7075..7140 CDD:143165
IG 7167..7239 CDD:214652
Ig 7173..7239 CDD:143165
Ig 7392..7475 CDD:299845
IG 7406..7475 CDD:214652
FN3 7489..7588 CDD:238020
S_TKc 7620..7876 CDD:214567
STKc_MLCK 7626..7876 CDD:271005
NexnNP_001344135.1 PTZ00121 <25..549 CDD:173412 140/674 (21%)
I-set 577..666 CDD:369462 19/93 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167836813
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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