DRSC/TRiP Functional Genomics Resources

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Protein Alignment Strn-Mlck and Hmcn2

DIOPT Version :9

Sequence 1:NP_001261019.1 Gene:Strn-Mlck / 36753 FlyBaseID:FBgn0265045 Length:8255 Species:Drosophila melanogaster
Sequence 2:XP_006498564.1 Gene:Hmcn2 / 665700 MGIID:2677838 Length:5092 Species:Mus musculus


Alignment Length:2679 Identity:585/2679 - (21%)
Similarity:941/2679 - (35%) Gaps:722/2679 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  5300 PTVDIQLTNRNTASGSDLKLTCGLSG-HEMNVQWFKDNCPIENGAKYRRTL--NDGLSCLEIKSA 5361
            |.::....|:.....:.:.|.|..|| ...:|.|||...||   :..||.:  .|| ..|.|:..
Mouse  1907 PNIEPGPVNKVVLENASVTLECLASGVPPPDVSWFKGRQPI---STQRRVIVSADG-RVLHIERV 1967

  Fly  5362 ELGDSGIYRCIASNQNGEVETSCLVTIYEAPSSKFG----TPPIFT--RNIRDAYHSQGNQLTLE 5420
            :|.|:|.|||:|:|..|            :...|:|    .||..|  .|:.... ..|....|.
Mouse  1968 QLSDAGSYRCVATNVAG------------SAGLKYGLRVNVPPRITLPPNLPGPV-LLGTPFRLT 2019

  Fly  5421 CKVSGSPKPHIYWQRD-NTLLP--IEGTKYQYEEQSDGIKLLTINNFGSNDSGLYTCYAESENGQ 5482
            |..:|:|:|.:.|.:| |.:.|  |.|.|.     ..|.::||:.:..::|||.|:|.|.|..|:
Mouse  2020 CNATGTPRPTLIWLKDGNPVSPEGIPGLKV-----FPGGQVLTVASARASDSGSYSCVAVSAVGE 2079

  Fly  5483 MKISKFVQA-------------SDYVRERIA-----------------DKKPI----------DK 5507
            .:....:|.             |..|.|.:.                 |.:|:          ||
Mouse  2080 DRRDVILQVHMPPSILGEELNMSVVVNESVTLECQSHAVPPPVLRWQKDGRPLEPHPGIRLSADK 2144

  Fly  5508 VIQEIKRDESSSAAAND----TAAAKAKAREAKLRLNLETSLK---------TMTIGSGNKAQLI 5559
            .:.|:.|     ||..|    |..|..:|..::...||...:.         |:|:..|..|:|.
Mouse  2145 ALLEVDR-----AAVWDAGHYTCEAINQAGRSEKHFNLHVWVPPAFPSKEPYTLTVTEGQTARLS 2204

  Fly  5560 CYVTGI-IEDVHWLRNDERV--TKDARHKIYNINGAISLEIYDARVEDSGHYRCVVKNSRQTVES 5621
            |...|| ...:.|.::.:.:  ..|:..::..:...:.|.  .|:....|.|.|...|:..|...
Mouse  2205 CDCQGIPFPKISWRKDGQPLPGEGDSLEQVLAVGRLLYLG--QAQSAQEGTYTCECSNAAGTSSQ 2267

  Fly  5622 AGQLSVL--DQSTGKLPESFSSGIIESYDDQRNEIVLSCQVIGR--PSVSWMRDDHSICNNRYRT 5682
            ...|.||  .|.||......:..:|     |.....|:|...|:  |.|:|.||...:.      
Mouse  2268 EQSLEVLVPPQVTGLWEPLTTVSVI-----QDGNTTLACNATGKPLPVVTWQRDGQPVS------ 2321

  Fly  5683 IEEPGGVR------KLVIRNPISSDCGIFACYAEHEDRIDSTSITIKAADLKRLINVSQEEIPSI 5741
             .|| |:|      .|.:....:|..|.::|.||:         |...|:.:..::|        
Mouse  2322 -VEP-GLRLQNQNHSLHVERAQASHAGGYSCVAEN---------TAGRAERRFALSV-------- 2367

  Fly  5742 GDHESTPWSRSQSHLS--SGSQVNGNGELHRAGDRVLRNVGKGKPLFHTLLHDRTVSEGANLRLV 5804
                     .:..||:  |.|..|....||                             .:..|:
Mouse  2368 ---------LAPPHLTGDSDSLTNVTATLH-----------------------------GSFTLL 2394

  Fly  5805 CSVSGDENTHIEWLKNHKPL-PRSDNRYQTVYLNGEASLEIFAAVADDSGNYTCCATNDFGESLT 5868
            |..:|.....::|.:..:|: ||..    |..|.|...|::..|...|.|.|:|.|:|:.||:  
Mouse  2395 CEAAGVPAPTVQWFQEGQPISPREG----TYLLAGGWMLKMTQAQEQDRGLYSCLASNEAGEA-- 2453

  Fly  5869 HAQLRVYKNFKEAPL--PSTFTQPIRDTYSLNENELV-LDCRVRGQPRPEIQWIKGTEPIEASEK 5930
                  .:||....|  ||...:.:.:...:.|.:.. |:|...|.|.|::.|.|..:.:...:.
Mouse  2454 ------RRNFSVEVLVPPSIENEDLEEVIKVPEGQTAQLECNATGHPPPKVTWFKDGQSLTVEDP 2512

  Fly  5931 FKPSDQADGYAKLVIVNPTEKDSGIYWCVARNEGAENKISHQVDFKGRQHYSLE-----KTHGFF 5990
            ::.|  .|| |.|.|......::|.|.|:|.|...|.          .:|..|.     ...|..
Mouse  2513 YEMS--PDG-AFLWIPQANLSNAGHYSCIASNAVGEK----------TKHTQLSVLVVPTILGVP 2564

  Fly  5991 HRDPNKPHFLLPLGNQTVCNGGTVAISAEFMETSTPIEVKWLRDRRVVD-GPNVKALADRGVYTL 6054
            .::.|:        ..||.....:::..|.:...:| .:.|::|....: ..|::.|.  |.:.|
Mouse  2565 EKNANE--------EVTVTINNPISLICEALAFPSP-NITWMKDGSPFEASKNIQLLP--GTHGL 2618

  Fly  6055 TIMNAGPEVEGTYTCRASNAFGRIESNVNVDVAVGAEKDERPPLFLSRPD-------TEMKIAVG 6112
            .|:||..|..|.|||..:|..|....|.:|:|.:       || .:|:.|       .|:|..|.
Mouse  2619 QILNAQKEDAGQYTCVVTNELGEATKNYHVEVLI-------PP-SISKDDPLGEVSVKEVKTKVN 2675

  Fly  6113 DPFSLSFRIAGDPKPKLTFMKGTKDITQSDRVSKEVSDDYTRFSVQQAQISDSGTYFVVARNNFG 6177
            ...:|.......|.|.:::.|..:.:|.|.|:|  |..:.....:|..|:||||.|..||.|..|
Mouse  2676 SSLTLECECWATPPPSISWYKDGRPVTPSHRLS--VLGEGRLLQIQPTQVSDSGRYLCVATNVAG 2738

  Fly  6178 TDRIFVTVTVNPRARSATPTQPRWGLPLDSYSDTSYFRDPPGCISTEPLVVDSGPTHI------- 6235
            .|.....|.:     ...|...:.|.....:....:..:..|.::....:|::.|.::       
Mouse  2739 EDDQDFNVLI-----QVPPMFQKMGDVDAGFEPLPHEEEAQGRVTEYREIVENNPAYLYCDTNAI 2798

  Fly  6236 ---SLSW---GKPVS-ANSAPVMAYKVEAWVVGHEGGAYWRELGLTPINSFDAFNLKPNVEYHFR 6293
               .|:|   |:|:| |:...|:           :||   |.|.|..:.:.||            
Mouse  2799 PPPELTWYREGQPLSAADGVSVL-----------QGG---RILQLPLVQAEDA------------ 2837

  Fly  6294 VTPKNRYGWGPTVQTSSPLQVG----GVECLPEFVKILPGQAKALL-------GSSFTLQCNMRG 6347
                .||      ...:..:||    ..|.|.....::||..:.|:       .|:.:|:|...|
Mouse  2838 ----GRY------SCKAANEVGEDWLHYELLVLTPPVIPGDTQELVEEVTVNASSAVSLECPALG 2892

  Fly  6348 APRPQVTWFKDGIQLSSSSERVKIRQIGSTCALTIATVSELDSGRYTCEATNSKGRVSTFARLQV 6412
            .|.|.|:||::|:.: |.|.|:::.:.|.  .|.:||....|:..|.|.|.|..|.......|:|
Mouse  2893 NPAPAVSWFQNGLPV-SPSPRLQVLEEGQ--VLKVATAEVADAASYMCVAENQAGSAEKLFTLKV 2954

  Fly  6413 VSDSRIYEADSRLKEIAHGRNVADVGDSLPIFTMRLRDRRVQVTYPVRLTCQIVGYPVPEILWYK 6477
                   :...::.:....:..|.:..|                  |.|.|::..:|.||:.|||
Mouse  2955 -------QVPPQISDWTTSQLTATLNSS------------------VSLPCEVYAHPNPEVTWYK 2994

  Fly  6478 DDELIHTDRKHLISAEGQFFTLEIAATTLDDSGTYTCLARNELGSVSCHCTLVVDKGIRAYISPD 6542
            |.:.:...::..:.....  ||.:|.....|||||.|.|.|..|.......|.|      .:.|.
Mouse  2995 DGQPLSLGQEAFLLPGTH--TLRLARAQPADSGTYLCEALNAAGRDQKMVQLNV------LVPPS 3051

  Fly  6543 FYV----PLDPFYIFREGSEIRLSTKVEAYPSVGVTWHRNGMRLRPSRRLTATLDSNGYVELIIA 6603
            |..    |.:...: |.|.:..||.:.::.|...|||.::...|...:|:.. |.....:|::.:
Mouse  3052 FKQAPGGPQEAIQV-RAGDKAILSCETDSLPEPAVTWFKDQQPLALGQRIQG-LQGGQTLEILDS 3114

  Fly  6604 EATVRDAGIYVCVASNVVGKVETICRVAVEEAENKAVAPQRSLEIPSIKTDDLPYSKEPLFVVKP 6668
            :|:  |.|:|.|..||..|:                          :|:|..|.....|.| .||
Mouse  3115 QAS--DKGVYSCKVSNTAGE--------------------------AIRTFVLAIQVPPTF-EKP 3150

  Fly  6669 RSSEAYE--GDNVIIFCEVVGDPKPEVVWLRDFLNPEYYKDAPH--FRRIGDGPEYRLEIPSAKL 6729
            ......:  |..:::.|:|.|.|.|.|.||:|.|..|  ....|  ..|.|     ||::...:.
Mouse  3151 ERETVNQVAGRTLVLACDVSGIPAPTVTWLKDRLPVE--SSVVHGVVSRGG-----RLQLSHLQP 3208

  Fly  6730 DFTGTYSVIASNCHGEAKAVISLQIFAKDILNKSRMDKVHTRHGNIETLPRFVRNLRNLRCCDGD 6794
            ...|||:.:|.|...||:....:.:.....:..|.|.:.|    |:               .:..
Mouse  3209 AQAGTYTCVAENAQAEARKDFVVSVLVPPQIQDSGMAQEH----NV---------------LEKQ 3254

  Fly  6795 AISLECHVEADPEPFIIWEKDG-----HVMPSDRDYVMSFDGTKATLSIPRVYPEDEGEYTCVAK 6854
            .|.|.|..|..|.|.|.|.|||     ||.|..|.|:   ||  :||.:..:...|.|.|||||.
Mouse  3255 EIRLHCEAEGQPPPDITWLKDGGLLDQHVGPHLRFYL---DG--STLVLKGLRTADSGAYTCVAH 3314

  Fly  6855 NSVGRSLSSACIIVDVPEEKENMLSRQLARPSGLLSAHS----TPRSTPRSTPARSFS------P 6909
            |..|.......:.|.||.     ..:|.|..:|.|.:.:    |.....:.:|....|      |
Mouse  3315 NPAGEDARLHTVNVLVPP-----TIKQQAGDTGTLVSRTGELVTMVCPVQGSPPIHVSWLKDGLP 3374

  Fly  6910 LRLSYRT-----------SSIDL-------------SGVAERRRSDARNAITAPKFL---AIPYN 6947
            |.||.||           |.:.|             :|||:|   :....:..|..|   ....|
Mouse  3375 LPLSQRTLLHSSGRTLRISQVQLADSGVFTCVAASPAGVADR---NFTLLVLVPPILEPVEFQNN 3436

  Fly  6948 RVVEEGDSVRFQCAISGHPTPWATWDKDGLIVTPTPRIAVKEIDDLRIIEIDEVTFDDAGLYRVT 7012
            .:..:|..|...|...|.|.|..:|.|||..:.|      :.::....::::.|:..|||.|..|
Mouse  3437 VMAAQGSEVVLPCEARGSPLPLVSWMKDGEPLLP------QSLEQGPGLKLESVSVGDAGTYSCT 3495

  Fly  7013 LENDFGRIEATARLDVIRSSRYSKSPSVRSVRASSSRRNAHLYRRIMGPSTAIGGRMALASGYRG 7077
            ..::.|......:|.|:......:|.....:                  |...|..:.|....||
Mouse  3496 AASEAGEARRHFQLTVMDPPHIEESGETSEL------------------SLTPGAHLELLCEARG 3542

  Fly  7078 SSVPSVRFYHNDVELEASERVHILLQDSMA--LLIVDNVTREDEGQYTCIISGDHDPLITSTTVT 7140
            ...|::.::.:...|..:|      .||.|  :|.|.:|..::.|.|||:.......:..|..| 
Mouse  3543 IPPPNITWHKDGQALRRTE------NDSQAGRVLRVRDVQVDNAGLYTCLAESPAGEVEKSFRV- 3600

  Fly  7141 FHDSNTEIRRRRAVITERLPEITKSLEGEVIDLCCSIECDEPYSYVWLRNGEILPDSDEFNYIDH 7205
                  .::....|:..|.|.....|....:.|.||:|.:......|.|.|.:|......::.:.
Mouse  3601 ------RVQAPPNVVGPRGPRSVVGLAPGQLILECSVEAEPAPEIEWHRGGVLLQADAHTHFPEQ 3659

  Fly  7206 GNGRLCLRINDAFDIDSGIYSC---------------QVFT--------SDINDSTSDSTF---D 7244
            |.   .|::......|.|.|||               ::.|        :.:|.|.:.:|.   .
Mouse  3660 GR---FLKLQALSTADGGDYSCTARNRAGSTSVAFRVEIHTAPTIQSGPNTVNVSVNRTTLLPCQ 3721

  Fly  7245 SHSICSLINSGCSD-------------------------CSSSGELCVLERDLRGQDEECVQLLK 7284
            :|.:.:.:.|...|                         ...:|....|..:..|.|.:.:.|..
Mouse  3722 THGVPTPLVSWRKDGIPLHPGSPRLEFLPEGSLRIHPVLAQDAGHYLCLASNSAGSDRKGLDLRV 3786

  Fly  7285 TPLPVVCASGDEAL----FYARVFPCDAEAD------WYLNGQLLAQADDSLNMTLESY---PEN 7336
            ...|.: |.|...|    :.....||:|...      |:.:||.|     .|.:...:|   |.|
Mouse  3787 FEPPAI-APGPSNLTLTAYSPASLPCEARGSPKPLVTWWKDGQKL-----DLRLQQGAYRLLPSN 3845

  Fly  7337 GIRL--------LRMRDVTASRSGE----------ICLQVKHPQAEF---RRIPTTRT-YTSLLV 7379
            .:.|        .:...|.::..||          :...:...|..|   |..|...| :::...
Mouse  3846 ALFLTAPSPQDSAQFECVVSNEVGESRRRYQVTVHVPPTIADDQTHFTVTRMAPVILTCHSTGSP 3910

  Fly  7380 LPAIRGNSSSSSLAARSC---ILTRPE----------------DCTA-----LIGGHVRLSVRYE 7420
            .||:..:.:.:.|.||..   ||  |.                .|||     :...|:.|:|:..
Mouse  3911 TPAVSWSKAGTQLGARGSGYRIL--PSGALEIERALPLHAGRYTCTARNSAGVARKHMVLTVQAS 3973

  Fly  7421 P-------------------------FPGTKVIWYKACHPIVESSNVTIRTTSQQSTLYITDISA 7460
            |                         .|...|||.|....|.|.:::.:..:.|   |.|...|.
Mouse  3974 PVVKPLPSVVQVVASEEVLLPCEASGIPQPMVIWQKEGLSIPEGAHMQVLPSGQ---LRIMHASP 4035

  Fly  7461 DDSGKYTVEVMNDYGVEAAAASVAVEGPPEPPSGQPSVSL-------------GPDRVAVAWCGP 7512
            :|:|.|.....|..|...|...:.|:.||...:|.|.:|.             |....|:.|   
Mouse  4036 EDAGNYFCIAQNSVGSAMAKTRLVVQVPPVIENGLPDLSTIEGSHALLPCTAKGSPEPAITW--- 4097

  Fly  7513 PYDGGCMITGF--IIEMQTIGDENCDEDSWQQVTRVVDSLAYTVKNLQPERQYRFRVRAENIHGR 7575
             ...|.:::|.  ...:|..|:                   ..|||.:.:....:...|||    
Mouse  4098 -EKDGHLVSGAEGKFTLQPSGE-------------------LLVKNSEGQDAGTYICTAEN---- 4138

  Fly  7576 SAPGQASELVQIT--NTPQRST-SSDASDRFGQAT--------------------------VSVQ 7611
             |.|:|...|.:|  ..|..:| ..|.|.|.|...                          ||.|
Mouse  4139 -AVGRARRRVHLTILTLPVLTTLPGDRSLRLGDRLWLRCVARGSPTPRIGWTINDQPVTEGVSEQ 4202

  Fly  7612 SGGDFKSRFEIIEE 7625
            .||....|..:..|
Mouse  4203 DGGSTLQRAAVTRE 4216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Strn-MlckNP_001261019.1 IG_like 51..127 CDD:214653
Ig <69..>112 CDD:299845
I-set 137..226 CDD:254352
I-set 235..314 CDD:254352
Ig_2 244..314 CDD:290606
I-set 438..513 CDD:254352
Ig 454..510 CDD:143165
I-set 537..626 CDD:254352
Ig 555..618 CDD:299845
I-set 636..713 CDD:254352
Ig 652..712 CDD:143165
SMC_N <2190..2854 CDD:280601
I-set 5300..5388 CDD:254352 27/90 (30%)
IGc2 5313..5378 CDD:197706 24/67 (36%)
IG 5412..5482 CDD:214652 23/72 (32%)
IGc2 5413..5481 CDD:197706 23/70 (33%)
I-set 5542..5627 CDD:254352 18/96 (19%)
Ig 5556..5621 CDD:143165 14/67 (21%)
Ig 5654..5721 CDD:143165 18/74 (24%)
I-set 5784..5874 CDD:254352 20/90 (22%)
IGc2 5797..5864 CDD:197706 18/67 (27%)
I-set 5887..5970 CDD:254352 20/83 (24%)
Ig 5902..5966 CDD:143165 18/64 (28%)
I-set 5997..6086 CDD:254352 22/89 (25%)
Ig 6026..6083 CDD:143165 18/57 (32%)
I-set 6097..6187 CDD:254352 28/96 (29%)
Ig 6114..6187 CDD:299845 22/72 (31%)
FN3 6216..6310 CDD:238020 19/107 (18%)
I-set 6321..6412 CDD:254352 27/97 (28%)
Ig 6328..6412 CDD:299845 27/90 (30%)
I-set 6442..6531 CDD:254352 23/88 (26%)
Ig 6459..6528 CDD:143165 22/68 (32%)
I-set 6541..6632 CDD:254352 23/94 (24%)
IGc2 6555..6622 CDD:197706 18/66 (27%)
I-set 6662..6754 CDD:254352 28/95 (29%)
Ig 6679..6751 CDD:143165 23/73 (32%)
I-set 6779..6868 CDD:254352 29/93 (31%)
IGc2 6793..6858 CDD:197706 28/69 (41%)
Ig 6938..7022 CDD:299845 21/86 (24%)
I-set 6939..7028 CDD:254352 22/91 (24%)
IG 7075..7140 CDD:214652 16/66 (24%)
Ig 7075..7140 CDD:143165 16/66 (24%)
IG 7167..7239 CDD:214652 18/94 (19%)
Ig 7173..7239 CDD:143165 18/88 (20%)
Ig 7392..7475 CDD:299845 28/131 (21%)
IG 7406..7475 CDD:214652 21/98 (21%)
FN3 7489..7588 CDD:238020 21/113 (19%)
S_TKc 7620..7876 CDD:214567 1/6 (17%)
STKc_MLCK 7626..7876 CDD:271005 585/2679 (22%)
Hmcn2XP_006498564.1 vWFA 38..196 CDD:238119
Ig 445..511 CDD:319273
IG 525..605 CDD:214652
I-set 609..693 CDD:369462
IG 707..783 CDD:214652
IG_like 793..876 CDD:214653
I-set 889..969 CDD:369462
Ig 992..1058 CDD:386229
IG 1076..1157 CDD:214652
Ig 1161..1242 CDD:386229
Ig 1262..1336 CDD:386229
I-set 1345..1429 CDD:369462
I-set 1449..1523 CDD:369462
IG 1553..1633 CDD:214652
IGc2 1654..1716 CDD:197706
Ig 1741..1819 CDD:386229
Ig 1839..1903 CDD:386229
I-set 1907..1986 CDD:369462 27/94 (29%)
Ig_3 1998..2073 CDD:372822 24/80 (30%)
Ig 2092..2179 CDD:386229 17/91 (19%)
Ig 2183..2273 CDD:386229 18/91 (20%)
Ig 2291..2367 CDD:386229 22/97 (23%)
IGc2 2389..2451 CDD:197706 18/65 (28%)
I-set 2476..2554 CDD:369462 22/90 (24%)
I-set 2558..2650 CDD:369462 24/102 (24%)
I-set 2668..2740 CDD:369462 23/73 (32%)
Ig 2782..2859 CDD:386229 21/112 (19%)
I-set 2876..2954 CDD:369462 24/80 (30%)
I-set 2966..3046 CDD:369462 25/99 (25%)
I-set 3050..3141 CDD:369462 26/120 (22%)
Ig 3145..3233 CDD:386229 28/95 (29%)
Ig 3256..3320 CDD:319273 29/68 (43%)
Ig 3347..3422 CDD:386229 15/77 (19%)
IG_like 3436..3511 CDD:214653 20/80 (25%)
IGc2 3530..3592 CDD:197706 17/67 (25%)
Ig 3614..3695 CDD:386229 17/83 (20%)
I-set 3699..3786 CDD:369462 11/86 (13%)
Ig 3789..3874 CDD:386229 19/90 (21%)
Ig 3900..3967 CDD:319273 13/68 (19%)
I-set 3974..4060 CDD:369462 18/88 (20%)
Ig 4064..4151 CDD:386229 21/114 (18%)
I-set 4155..4240 CDD:369462 13/62 (21%)
IGc2 4259..4321 CDD:197706
I-set 4335..4421 CDD:369462
G2F 4423..4605 CDD:369383
FXa_inhibition 4664..4699 CDD:373209
EGF_CA 4701..4744 CDD:311536
EGF_CA 4746..4783 CDD:214542
EGF_CA 4789..4829 CDD:214542
EGF_CA 4896..4935 CDD:214542
EGF_CA 4936..4974 CDD:214542
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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