DRSC/TRiP Functional Genomics Resources

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Protein Alignment Strn-Mlck and mylka

DIOPT Version :10

Sequence 1:NP_001261019.1 Gene:Strn-Mlck / 36753 FlyBaseID:FBgn0265045 Length:8255 Species:Drosophila melanogaster
Sequence 2:XP_009302720.2 Gene:mylka / 569510 ZFINID:ZDB-GENE-030131-8207 Length:1857 Species:Danio rerio


Alignment Length:2164 Identity:552/2164 - (25%)
Similarity:863/2164 - (39%) Gaps:489/2164 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly  5951 KDSGIYW-----CVARNEGAENKISH----QVDFKGRQHYS---LEKTHGFFHRDPNKPHFLLPL 6003
            :|||: |     |...|:.......|    .|.|....|.|   |....|...::|  |.|.||.
Zfish    30 RDSGV-WTRSRHCTLVNDTNLRCCLHGMMADVQFVTGSHVSKTALTLGRGSPSKEP--PVFTLPP 91

  Fly  6004 GNQTVCNGGTVAISAEFMETSTPIEVKWLRDRRVVDGPNVKALAD--RGVYTLTIMNAGPEVEGT 6066
            .|..||.|||..:..:......| :|.|.|:.:::...:..::..  ||.::|.:........|.
Zfish    92 RNTRVCQGGTARLEGKVRGFPEP-QVCWFRNGKLLIAGDHYSMEQSVRGTFSLVVQEVEDADGGR 155

  Fly  6067 YTCRASNAFGRIESNVNVDV------------------AVGAEK--------DERPPLFLSRPDT 6105
            |||.|.|..|..:..|.:.|                  ::||..        .|.||.|:::| :
Zfish   156 YTCEAVNDAGSCQVTVEIIVEGNTGKKYSLPSTNRTGRSMGAPAVENRASIWGESPPKFVAKP-S 219

  Fly  6106 EMKIAVGDPFSLSFRIAGDPKPKLTFMKGTKDITQSDRVSKEVSDDYTRFSVQQAQISDSGTYFV 6170
            .:.:.||.....|.:|.|.|:|.:.:.||.:.|.|||.        |..|       ..||.:|:
Zfish   220 RLYLKVGQTGKFSAKITGRPQPLVQWYKGEEMIQQSDH--------YNMF-------ERSGMHFL 269

  Fly  6171 VARNNFGTDRIFVTVTVNPRARSATPTQPRWGLPLDSYSDTSYFRDPPGCISTEPLVVDSGPTHI 6235
            ..||.|..|....|..|...|..|:                          :...|::..|.|. 
Zfish   270 EIRNVFSEDAGMYTCLVANSAGKAS--------------------------AAAELIMQDGDTE- 307

  Fly  6236 SLSWGKPVSANSAPVMAYKVEAWVVGHEGGAYWRELGLTPINSFDAFNLKPNVEYHFRVTPKNRY 6300
            ::...|| |.|.:.....|..:..:.:|     ::...|.|.:.                     
Zfish   308 TVIMAKP-SHNPSKSFMLKDTSNTLANE-----QKTSSTSIETI--------------------- 345

  Fly  6301 GWGPTVQTSSPLQVGGVECLPEFVKILPGQAKALLGSSFTLQCNMRGAPRPQVTWFKDGIQLS-- 6363
                ..:|.:||....|..:|...:          |.:..:..::...|..:.|   ||...:  
Zfish   346 ----ITETPTPLSTTTVPTVPSMNR----------GETTIVTSSLHSQPISRST---DGRSATGQ 393

  Fly  6364 SSSERVKIRQIGSTCALTIATVSELDSGRYTCEATNSKGRVSTFARLQVVSDSRIYEADSRLKEI 6428
            ::|..|.:|...|....|..|...|...|...:...|.         |:.|.:|....::|:   
Zfish   394 NTSNLVNLRSQNSVKNETHGTKRVLGMFRAPGQMPQSS---------QIESSTRQQTKETRM--- 446

  Fly  6429 AHGRNVADVGDSLPIFTMRLRDRRVQVTYPVRLTCQIVGYPVPEILWYKDDELIHTDRKHLISAE 6493
                   ||.::.|.|..:.:.:.|.....|...||:.|.|||.:.|.||...:..........|
Zfish   447 -------DVLETPPSFDSQPQSQEVLQGEKVTFKCQVSGSPVPAVSWLKDGAPLRQRSDVSTRQE 504

  Fly  6494 GQFFTLEIAATTLDDSGTYTCLARNELGSVSCHCTLVVDKGIRAYISPDFYVPLDPFYIFREGSE 6558
            .....|.:....:.|:|.|.|.|.|..|:.:.|.:|.| |.:|....|..:..........||.|
Zfish   505 AGLHVLCLDNAHITDTGQYGCTAANRRGNTAAHWSLTV-KRVRVDAKPPVFSSALKDCSVCEGQE 568

  Fly  6559 IRLSTKVEAYPSVGVTWHRNGMRLRPSRRLTATLDSNGYVELIIAEATVRDAGIYVCVASNVVGK 6623
            ..|...||..|...::|..|...:..|.    |:..|...:|.:..|.:.|||:|.|||.|..|:
Zfish   569 FTLQCSVEGKPQPELSWLHNDKPIPFSH----TMFDNSKAQLRVQAAVLEDAGVYSCVAVNEHGR 629

  Fly  6624 VETICRVAVEEAE--NKAVAPQRSLEIPSIKTDDLPYSKEPLFVVKPRSSEAYEGDNVIIFCEVV 6686
            ......|.|:...  .::.||         ...||..:..|||:...:.....:|..||:..||.
Zfish   630 AVCTAHVLVKARPRVKRSAAP---------PVTDLRRTSAPLFLKGLQDLRVMDGSQVIMTVEVT 685

  Fly  6687 GDPKPEVVWLRDFLNPEYYKDAPHFRRIGDGPEYRLEIPSAKLDFTGTYSVIASNCHGEAKAVIS 6751
            |:|.||||||.:....:..:|. ||.:  .|.:|.|.|.....:.||||:....|..|.|:...|
Zfish   686 GNPAPEVVWLHNGKEIQESEDF-HFEK--KGGQYTLFIQEVFPEDTGTYTCEVWNEAGNARTQAS 747

  Fly  6752 LQIFAKDILNKSRMDKVHTRHGNIETLPRFVRNLRNLRCCDGDAISLECHVEADPEPFIIWEKDG 6816
            |.:       :...|.|.         |.|:...::.....|....|.|.:..||.|..:|.|||
Zfish   748 LTV-------QEPQDGVQ---------PWFITKTKSSTASLGQHALLSCAIAGDPFPEFLWMKDG 796

  Fly  6817 HVMPSDRDYVMSFDGTKATLSIPRVYPEDEGEYTCVAKNSVGRSLSSACIIV--------DVPEE 6873
            .|:..|.|:.:.......:|.|.:|.....|.|....||.||...|.|.:.|        |...:
Zfish   797 QVISGDGDFEILQKEDVVSLLIRKVAMHHAGNYEIHLKNKVGECRSVATLHVSEDPMLSADDANK 861

  Fly  6874 KENMLSRQLAR------PSGLLSAHSTPRSTPRSTPARSFSPLR--LSYRTSSIDLSGVAERRRS 6930
            :..:....|.|      ||...|.||...|:............|  |..|..:      .|.|..
Zfish   862 RRGVEKTALGRGGQPKTPSPAASLHSEEHSSGTDQQEEEGGSTRGLLKRRVET------KEHRED 920

  Fly  6931 DARNAITAPKFLAIPYNRVVEEGDSVRFQCAISGHPTPWATWDKDGLIVTPTPRIAVKEI--DDL 6993
            ..|.                :|.:.:.|:..:.                   .::..|.:  :||
Zfish   921 QIRQ----------------QEAEQIDFRTVLG-------------------RKVTTKSVSEEDL 950

  Fly  6994 RIIEIDEVTFDDAGLYR----VTLENDFGRIEATARLD----VIRSSRYSKSPSVRSVRASSSRR 7050
            :.|..:::.| ...|.|    .|...:..::....::|    :.:.:.....|:..|::...|:.
Zfish   951 KEITAEQMDF-RGNLQRQIKPKTQTEEQRKVNTPQQVDFRAVLGKKASQGPKPAPGSLKTQPSKN 1014

  Fly  7051 NAHLYRRIMG----PSTAIGGRMALASGYRGSSVPSVRFYHNDVELEASERVHILLQDSMALLIV 7111
            .|..:|.::|    |.|         ....|.|....|...|||.                  .|
Zfish  1015 EAVDFRSVLGNKKKPPT---------QDRNGESQGDPRGKENDVN------------------CV 1052

  Fly  7112 DNVTREDEGQYTCIISGDHDPLITSTTVTFHDSNTEIRRRRAVITERLPEITKSLEGEVIDLCCS 7176
            |...:|     |...:|..:|                     |..|:|.::| .|:||.:.|.|.
Zfish  1053 DGEIKE-----TTKAAGKKEP---------------------VFVEKLSDVT-VLDGERLHLQCQ 1090

  Fly  7177 IECDEPYSYVWLRNGEILPDSDEFNYIDHGNGRLCLRINDAFDIDSGIYSCQVFTSDINDSTSDS 7241
            :..:.|....|:.:|:::..| :|..|.:...|..|.|:.|...|.|.|.|:..|.:        
Zfish  1091 LSSESPAKVTWMLDGKVIRPS-KFIIITNEGDRYSLSIDKALPEDEGQYVCRAETDE-------- 1146

  Fly  7242 TFDSHSICSLINSGCSDCSSSGELCVLERDLRGQDEECVQLLKTPLPVVCASGDEALFYARVFPC 7306
                         |.::||                  ||.|:..|                    
Zfish  1147 -------------GKTECS------------------CVVLVNDP-------------------- 1160

  Fly  7307 DAEADWYLNGQLLAQADDSLNMTLESYPENGIRLLRMRDVTASRSGEICLQVKHPQAEFRRIPTT 7371
                       .::..||                        .||.:........:|:.:: |..
Zfish  1161 -----------SVSTPDD------------------------KRSRKPSTPTTENEAKIKK-PPP 1189

  Fly  7372 RTYTSLLVLPAIRGNSSSSSLAARSCILTRPEDCTALIGGHVRLSVRYEPFPGTKVIWYKACHPI 7436
            :|.......|.|:               ..|:|...:.|..|.|..::.........|.|...||
Zfish  1190 KTLPKQGAPPQIQ---------------QFPDDMKIMAGQEVILQCKFTGALPISCTWLKFRKPI 1239

  Fly  7437 VESSNVTIRTTSQQSTLYITDISADDSGKYTVEVMNDYGVEAAAASVAVEGPPEPPSGQPSVS-L 7500
            .|...::|.:|...|.|.||:...:..|.||:|:.|.:||..||.::.:...|:||:..|:.| :
Zfish  1240 QEGQGISIVSTDSSSQLTITEGQQEHCGCYTIEIKNSFGVRQAALNLTIVDKPDPPARVPAASDI 1304

  Fly  7501 GPDRVAVAWCGPPYDGGCMITGFIIEMQTIGDENCDEDSWQQVTRVVDSLAYTVKNLQPERQYRF 7565
            ....:.::|.||.||||..:..:.:|..     |..:..|..|.. .:|.:|.|::|.|:|||:|
Zfish  1305 RKSSLTLSWYGPTYDGGSAVQSYNLEAW-----NSLDMKWTDVAS-CNSTSYNVQDLLPDRQYKF 1363

  Fly  7566 RVRAENIHGRSAPGQASELVQI-------TNTPQRSTSSDASDRF-GQATVSVQSGGDFKSRFEI 7622
            ||||.||:|...|...||.||:       ....:...|.|.|::. ....|::::....|..:::
Zfish  1364 RVRAVNIYGVGEPSAESEPVQVGLEAEGENKEDEVEPSDDESEKVPDYRNVTIKTDVKVKDFYDV 1428

  Fly  7623 IEELGKGRFGIVYKVQERGQPEQLLAAKVIKCIKSQDRQKVLEEISIMRALQHPKLLQLAASFES 7687
            .:.||.|:||.|:|:.|: ..:::.|.|.||...:::::.|.:||:||..|.||||:|...:||.
Zfish  1429 EDRLGTGKFGTVFKLIEK-STKKVWAGKFIKAYSAKEKENVRQEIAIMNDLHHPKLVQCIDAFEG 1492

  Fly  7688 PREIVMVMEYITGGELFERVVADDFTLTEMDCILFLRQVCDGVAYMHGQSVVHLDLKPENIMCHT 7752
            ..:||||:|.|:|||||:|::.:||.|||.:.|.::.|:.|||.::|.:.:||||||||||||..
Zfish  1493 KTDIVMVLEMISGGELFDRIIDEDFELTEREVIKYMLQIVDGVNFIHKKGIVHLDLKPENIMCVN 1557

  Fly  7753 RTSHQIKIIDFGLAQRLDTKAPVRVLFGTPEFIPPEIISYEPIGFQSDMWSVGVICYVLLSGLSP 7817
            :|..:||:||||||:||:....::||||||||:.||:|:||.|.:.:||||:|||||:|:|||||
Zfish  1558 KTGSKIKLIDFGLARRLENAGSLKVLFGTPEFVAPEVINYEAISYATDMWSIGVICYILVSGLSP 1622

  Fly  7818 FMGDTDVETFSNITRADYDYDDEAFDCVSQEAKDFISQLLVHRKEDRLTAQQCLASKWLSQRPDD 7882
            ||||.|.||.||:|.|.:|::|||||.:|:|||||||.||....:.|||..||....||.| ...
Zfish  1623 FMGDNDNETLSNVTSATWDFEDEAFDEISEEAKDFISNLLKKDMKARLTCDQCFQHPWLKQ-DTT 1686

  Fly  7883 SLSNNKICTDKLKKFIIRRKWQKTGNAIRALGRMANLSVSRRNSAIAMGV---LSSP-------- 7936
            ::...|:..:::||:|:||||||||:|:||:||::|:       |:..||   .|||        
Zfish  1687 NMEAKKLSKERMKKYILRRKWQKTGHAVRAIGRLSNM-------ALMAGVHAKKSSPTEADAKQF 1744

  Fly  7937 ----------RPSISGLGMLTTSAIGSGTSSQMTSLHEEEDD-----FSGEMPPVEKRTVLKLRD 7986
                      :|:.|  .::....:..|::::.....|...|     :..:.|..|.|       
Zfish  1745 AAELEAKTLMKPTFS--SVIKDVEVVEGSAARFDCKIEGYPDPEVVWYKDDQPIKETR------- 1800

  Fly  7987 KSQCSERSDSGYSECSNCS 8005
                  .....|.|..|||
Zfish  1801 ------HFQIDYDEDGNCS 1813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Strn-MlckNP_001261019.1 Ig_3 26..112 CDD:464046
Ig <70..112 CDD:472250
Ig strand E 92..96 CDD:409353
Ig strand F 106..111 CDD:409353
Ig 137..226 CDD:472250
Ig strand B 154..158 CDD:409353
Ig strand C 167..171 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 219..222 CDD:409353
Ig 235..314 CDD:472250
Ig strand B 251..255 CDD:409564
Ig strand C 264..268 CDD:409564
Ig strand E 280..284 CDD:409564
Ig strand F 294..299 CDD:409564
Ig strand G 307..310 CDD:409564
Ig_3 336..414 CDD:464046
Ig 438..513 CDD:472250
Ig strand B 454..458 CDD:409564
Ig strand C 467..471 CDD:409564
Ig strand E 483..487 CDD:409564
Ig strand F 493..498 CDD:409564
Ig strand G 506..509 CDD:409564
Ig 537..628 CDD:472250
Ig strand B 554..558 CDD:409353
Ig strand C 567..571 CDD:409353
Ig strand F 607..612 CDD:409353
Ig strand G 620..623 CDD:409353
Ig 636..713 CDD:472250
Ig strand B 652..656 CDD:409564
Ig strand C 665..669 CDD:409564
Ig strand E 681..685 CDD:409564
Ig strand F 695..700 CDD:409564
Ig strand G 708..711 CDD:409564
SMC_N <2131..2664 CDD:481474
PTZ00121 <2600..3256 CDD:173412
PTZ00121 <3635..4609 CDD:173412
PTZ00121 <4215..5072 CDD:173412
I-set 5300..5388 CDD:400151
Ig strand B 5317..5321 CDD:409353
Ig strand C 5329..5333 CDD:409353
Ig strand E 5354..5358 CDD:409353
Ig strand F 5368..5373 CDD:409353
Ig_3 5399..5477 CDD:464046
Ig 5542..5627 CDD:472250
Ig strand B 5556..5560 CDD:409353
Ig strand C 5568..5572 CDD:409353
Ig strand E 5593..5597 CDD:409353
Ig strand F 5607..5612 CDD:409353
Ig 5654..5721 CDD:409353
Ig strand B 5654..5658 CDD:409353
Ig strand C 5665..5669 CDD:409353
Ig strand E 5690..5694 CDD:409353
Ig strand F 5704..5709 CDD:409353
Ig strand G 5718..5721 CDD:409353
I-set 5784..5874 CDD:400151
Ig strand B 5801..5805 CDD:409353
Ig strand C 5814..5818 CDD:409353
Ig strand E 5840..5844 CDD:409353
Ig strand F 5854..5859 CDD:409353
Ig 5902..5963 CDD:409353 5/16 (31%)
Ig strand B 5902..5906 CDD:409353
Ig strand C 5915..5919 CDD:409353
Ig strand E 5941..5945 CDD:409353
Ig strand F 5955..5960 CDD:409353 2/9 (22%)
Ig 5997..6086 CDD:472250 25/90 (28%)
Ig strand B 6014..6018 CDD:409353 0/3 (0%)
Ig strand C 6028..6032 CDD:409353 1/3 (33%)
Ig strand E 6050..6056 CDD:409353 2/5 (40%)
Ig strand F 6066..6071 CDD:409353 3/4 (75%)
Ig strand G 6079..6082 CDD:409353 0/2 (0%)
Ig 6107..6187 CDD:472250 23/79 (29%)
Ig strand B 6115..6119 CDD:409353 0/3 (0%)
Ig strand C 6128..6132 CDD:409353 0/3 (0%)
Ig strand E 6153..6157 CDD:409353 1/3 (33%)
Ig strand F 6167..6172 CDD:409353 1/4 (25%)
Ig strand G 6180..6183 CDD:409353 0/2 (0%)
FN3 6216..6310 CDD:238020 12/93 (13%)
I-set 6321..6412 CDD:400151 15/92 (16%)
Ig strand B 6339..6343 CDD:409353 0/3 (0%)
Ig strand C 6352..6356 CDD:409353 1/3 (33%)
Ig strand E 6375..6382 CDD:409353 1/6 (17%)
Ig strand F 6392..6397 CDD:409353 1/4 (25%)
Ig strand G 6405..6408 CDD:409353 0/2 (0%)
I-set 6442..6531 CDD:400151 24/88 (27%)
Ig strand B 6459..6463 CDD:409353 1/3 (33%)
Ig strand C 6472..6476 CDD:409353 0/3 (0%)
Ig strand E 6497..6501 CDD:409353 1/3 (33%)
Ig strand F 6511..6516 CDD:409353 2/4 (50%)
Ig strand G 6524..6527 CDD:409353 0/2 (0%)
Ig 6541..6632 CDD:472250 25/90 (28%)
Ig strand B 6559..6563 CDD:409353 1/3 (33%)
Ig strand C 6572..6576 CDD:409353 0/3 (0%)
Ig strand E 6598..6602 CDD:409353 1/3 (33%)
Ig strand F 6612..6617 CDD:409353 2/4 (50%)
Ig strand G 6625..6628 CDD:409353 0/2 (0%)
Ig 6662..6754 CDD:472250 32/91 (35%)
Ig strand B 6679..6683 CDD:409353 2/3 (67%)
Ig strand C 6692..6696 CDD:409353 3/3 (100%)
Ig strand E 6720..6724 CDD:409353 2/3 (67%)
Ig strand F 6734..6739 CDD:409353 2/4 (50%)
I-set 6779..6868 CDD:400151 26/88 (30%)
Ig strand B 6796..6800 CDD:409353 1/3 (33%)
Ig strand C 6809..6813 CDD:409353 0/3 (0%)
Ig strand E 6834..6838 CDD:409353 1/3 (33%)
Ig strand F 6848..6853 CDD:409353 1/4 (25%)
I-set 6939..7028 CDD:400151 11/98 (11%)
Ig strand B 6956..6960 CDD:409353 1/3 (33%)
Ig strand C 6969..6973 CDD:409353 0/3 (0%)
Ig strand E 6993..6998 CDD:409353 2/4 (50%)
Ig strand F 7008..7013 CDD:409353 2/8 (25%)
Ig strand G 7021..7024 CDD:409353 0/2 (0%)
IG_like 7075..7140 CDD:214653 12/64 (19%)
Ig strand C 7082..7086 CDD:409353 1/3 (33%)
Ig strand E 7107..7111 CDD:409353 0/3 (0%)
Ig strand F 7121..7126 CDD:409353 1/4 (25%)
Ig strand G 7135..7138 CDD:409353 0/2 (0%)
Ig 7173..7232 CDD:409353 16/58 (28%)
Ig strand C 7184..7188 CDD:409353 0/3 (0%)
Ig strand E 7210..7214 CDD:409353 1/3 (33%)
Ig strand F 7224..7229 CDD:409353 2/4 (50%)
IG_like 7406..7475 CDD:214653 19/68 (28%)
Ig strand B 7413..7417 CDD:409353 2/3 (67%)
Ig strand C 7426..7430 CDD:409353 0/3 (0%)
Ig strand E 7451..7455 CDD:409353 2/3 (67%)
Ig strand F 7465..7470 CDD:409353 2/4 (50%)
FN3 7489..7588 CDD:238020 37/106 (35%)
STKc_MLCK 7626..7876 CDD:271005 132/249 (53%)
mylkaXP_009302720.2 None
Blue background indicates that the domain is not in the aligned region.

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