DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Strn-Mlck and sdk1b

DIOPT Version :9

Sequence 1:NP_001261019.1 Gene:Strn-Mlck / 36753 FlyBaseID:FBgn0265045 Length:8255 Species:Drosophila melanogaster
Sequence 2:XP_017211454.1 Gene:sdk1b / 555553 ZFINID:ZDB-GENE-090311-17 Length:2292 Species:Danio rerio


Alignment Length:2043 Identity:409/2043 - (20%)
Similarity:681/2043 - (33%) Gaps:668/2043 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  6321 PEFVKILPGQAKALLGSSFTLQCNMRGAPRPQVTWFKDGIQLSSSSERVKIRQIGSTCALTIATV 6385
            |.|.....|....|.|:...|.|...|:...:..|.::...::..:...:         .||.::
Zfish   169 PYFKTETGGAQTHLEGNRLVLTCLAEGSWPLEFKWMRNSTDITEYTPEYR---------YTIVSL 224

  Fly  6386 SELDSGRYTCEATNSKGRVSTFARLQVVSDSRIYEADSRLKEIAHGRNVADVGDSLPIFTMRLRD 6450
            ...|:|.|.|...|..|     |.:|..:|.|:...|: ..|:...:.|:              .
Zfish   225 KREDAGVYQCAVRNRMG-----ALIQTRADVRVAYMDN-FAELEQRKTVS--------------Q 269

  Fly  6451 RRVQVTYPVRLTCQIVGYPVPEILWYKDDELIHTDRKHLISAEGQFFTLEIAATTLDDSGTYTCL 6515
            .|..|..|..:|    .:|.|::.|::|...|..:.:..|:.:.|...|..||.   |:|.|...
Zfish   270 GRAAVLNPPAVT----SFPRPQVTWFRDGVKIIPNHRVAITLDNQLVVLSTAAA---DAGRYYVQ 327

  Fly  6516 ARNELG-----SVSCHCTLVVDKGIRAYISPDFYVPLD---PFYIFRE--------GSEIRLS-- 6562
            |.||..     |.|.:.::.::|..|..:: |...|.:   |..:...        .||..|.  
Zfish   328 AVNERNGENKTSPSIYLSIAINKRNRGSLA-DVIAPAELVAPVIVIAPKNTSVVAGASEATLECV 391

  Fly  6563 TKVEAYPSVGVTWHRNGMRLRPSRRLTATLDSNGYVELIIAEATVRDAGIYVCVASNVVGKVETI 6627
            ....:...:.|.|.|||:      ||||.:||.|. .|:|:..|..|.|:|||.|        |:
Zfish   392 ANARSLDRLQVFWKRNGV------RLTAGVDSFGR-RLVISNPTSADGGLYVCEA--------TL 441

  Fly  6628 CRVAVEEAENKAVAPQRSLEIPSIKTDDLPYSKEPLFVVKPRSSEAYEGD-NVIIFCEVVGDPKP 6691
            ...:.:..|.||.               |...:.|.|..||:.....|.: ||.:.|...|.|.|
Zfish   442 RNSSQKSTEAKAY---------------LSVLESPHFTSKPKRYMIAEVEKNVELQCHAKGVPTP 491

  Fly  6692 EVVWLRDFLNPEYYKDAPHFRRIGDGPEYRLEIPSAKL-------DFTGTYSVIASNCHGEAKAV 6749
            ::.|         :|||.....:.:. .|:|...|..|       |..|.:...|.|..||.:|.
Zfish   492 KLEW---------FKDAIPLSTLNNS-RYKLTTSSMVLQVRRIQPDDAGIFQCFAENTAGEIQAH 546

  Fly  6750 ISLQIFAKDILNKSRMDKVHTRHGNIETLPRFVRNLRNLRCCDGDAISLECHVEADPEPFIIWEK 6814
            .:|.|.:..                    |.|.....::...||.:....|.....|:|.|:|.|
Zfish   547 TNLVITSMS--------------------PLFTTPPSDITVTDGTSAVFTCDTSGAPKPAIVWRK 591

  Fly  6815 DGHVMPS-----DRDYVMSFDGTKATLSIPRVYPEDEGEYTCVAKNSVGRSLSSACIIVDVPEEK 6874
            ...|:.|     .|..::...|    |.|..:.|.|.|.|||:|.|:.|  |.:|.:.:.|    
Zfish   592 GSQVLASGSVQTPRFTLLESGG----LQILPIMPSDAGNYTCLASNTEG--LVNATVALTV---- 646

  Fly  6875 ENMLSRQLARPSGLLSAHSTPRSTPRSTPARSFSPLRLSYRTSSIDLSGVAERRRSDARNAITAP 6939
               |||                 |..|||                                    
Zfish   647 ---LSR-----------------TFISTP------------------------------------ 655

  Fly  6940 KFLAIPYNRVVEEGDSVRFQCAISGHP--TPWATWDK--DGLIVTPTPRIAVKEIDDLRIIEIDE 7000
                 |.::.|.:|.:....||.:..|  |...:|.|  ..|.|:...|:::||    ..::|.:
Zfish   656 -----PEDQRVIKGTTAVLHCAATHDPRVTVRYSWKKGTKPLSVSTGGRVSMKE----GSLQISQ 711

  Fly  7001 VTFDDAGLYRVTLENDFGRIEATARLDVIRSSRYSKSPSVRSVRASSSRRNAHLYRRIMGPSTAI 7065
            ....|.|.|...:.:..|....:|||:||....     |.|:::.:.:..::             
Zfish   712 TWSGDIGDYTCRVISPAGNDSKSARLEVIELPH-----SPRNLQVALNETDS------------- 758

  Fly  7066 GGRMALASGYR---GSSVPSVRFYHNDVELEASERVHI-LLQDSMALLIVDNVT----------- 7115
              |..|.|..|   |:| |.:.:.....|..:..:|:: .:..::|.|:|..:|           
Zfish   759 --RTVLLSWVRPFDGNS-PLLHYIIEFSENNSPWKVYMDDVSPTLASLLVIGLTPARTYQFRVCA 820

  Fly  7116 --REDEGQYTC----IISGDHDPLITSTTVTFHDSNTEIRRRRAVITERLPEITKSLEGEVIDLC 7174
              :...|||:.    ::..:..|......:.     ...|..::::.:..|.....|.|.:    
Zfish   821 VNQVGRGQYSAETNRLMLREEPPSAPPKNIV-----ASGRTNQSIMVQWQPPPEPQLNGVL---- 876

  Fly  7175 CSIECDEPYSYVWLRNGEILP--------DSDEFNYIDHGNGRLCLRINDAFDIDSGIYSCQVFT 7231
                    ..||.......||        .|.|.||...|.    |.|...::|....|:     
Zfish   877 --------RGYVLRYRLAGLPGEFQLKNITSAEINYCLIGE----LIIWTQYEIQVAAYT----- 924

  Fly  7232 SDINDSTSDSTFDSHSICSLINSGCSDCSSSGELCVLERDLRG------QDEECVQL----LK-- 7284
                                 .:|....|.|    ..|..|:|      ||.|.|.|    :|  
Zfish   925 ---------------------GAGLGVYSQS----ATEYTLQGVPTAPPQDVEAVALNSTTIKFT 964

  Fly  7285 -TPLPVVCASGDEALFYARVFPCDAEADWYLNGQLLAQADDSLNMTLESYPENGIR----LLRMR 7344
             ||.|....:|....:...|:|              ....|.:.|...:...:|.|    :..:|
Zfish   965 WTPPPQQFINGINQGYKLLVWP--------------EHCPDCITMVTIAPEFHGSRHYGYVSNLR 1015

  Fly  7345 DVTASRSGEICLQV--KHPQAEFRRI--------PTTR-TYTSLLVLPAIRGNSSSSSLAARSCI 7398
            ..|...:..:|...  ..|.:..:.|        |.|: ::|.:|          .:||...   
Zfish  1016 KFTWYETAVLCFTTPGDGPASTSQLIQTHVDKPGPVTQLSFTEIL----------DTSLRIS--- 1067

  Fly  7399 LTRPEDCTALIGGHVRLSVRYEPFPGTKVIWYKACHPIVESSNVTI--RTTSQQSTLY-ITDISA 7460
            ...|||...:|.|:|             :.|.:|      ..|.|:  :|.|..:..| :|.:::
Zfish  1068 WQEPEDKNGIITGYV-------------LSWQEA------GQNETLVSQTLSNSTLAYKVTGLTS 1113

  Fly  7461 DDSGKYTVEVMNDYGVEAAAASVAVEG-PPEPPSGQPS----VSLGPDRVAVAWCGPPYDGGCMI 7520
            ..:....|..:...||.|:.:|....| |||.| |.||    .::.|..|.:.: .|..||...|
Zfish  1114 LTTYALQVAAVTQAGVGASTSSTISTGLPPELP-GAPSNLVISNISPRSVTIQF-SPGSDGKTEI 1176

  Fly  7521 TGFIIEMQT--IGDENCDEDSWQQVTR-----VVDSLAYTVKNLQPERQYRFRVRAENIHGRSAP 7578
            :.:|:|.|.  :|:|. .|..|:.:..     ..|:|  .:.||.|..|||||::..||.|.|..
Zfish  1177 SKWIVEGQVVIVGEEE-KEAEWKVLYERDSPPASDTL--EIPNLIPFTQYRFRMKQVNIVGSSPF 1238

  Fly  7579 GQASELVQ-ITNTPQRS-------TSSDAS-----------------------------DRFGQ- 7605
            .::|.|:| :.::|..:       ::|:.|                             |.||| 
Zfish  1239 SESSRLMQTLQSSPDVAPTELVVFSASETSLRIRWEPLPEAAYNGNPESVGYRVRAQRADGFGQP 1303

  Fly  7606 --ATVS-----------VQSGGDFKSRFEIIEELGKGRFG--IVYKVQE---RGQPEQLLAAKVI 7652
              .|||           ::...|::...:....:|.|.:.  ::.|.:|   .|.||.:.|    
Zfish  1304 RMETVSDRLSCEVTVEGLEEWTDYELSIQAFNSIGPGPWSSHVLGKTKESVPSGAPENVSA---- 1364

  Fly  7653 KCIKSQDRQKVLEEISIM----RALQHPK---------LLQLAASFESPREIVMVMEYITGGELF 7704
                     :.:...|::    ...:|.|         |.:...|..:|:     ...:.|.:..
Zfish  1365 ---------EAMSSTSVLVTWGSVPEHQKNGHILGYKVLYREKDSDRAPQ-----AHLVNGNQTH 1415

  Fly  7705 ERVVAD--DFTLTEMDCILFLRQVCDGVAYMHGQSVVHLDLKPENIMCHTRTSHQIKIIDFGLAQ 7767
            ..::.:  .||:.|:..:.|.| |.||              .|.......||...:         
Zfish  1416 MLLLRNLSKFTVYEIQVLAFTR-VGDG--------------PPSLPPTAERTKDDV--------- 1456

  Fly  7768 RLDTKAPVRVLFGTPE---------FIPPEIISYEP----IGFQSDMWSVGVICYVL-LSGLSPF 7818
               ...|||::|  ||         :.||.    ||    :|:|        |.|.| ::..:.|
Zfish  1457 ---PGPPVRLMF--PEVRLSSVRVVWQPPS----EPNGIIMGYQ--------ISYRLDINDPNKF 1504

  Fly  7819 MGDTDVETFSN---------ITRADYDYD------------DEAFDCVSQEAKDFISQLLVHRKE 7862
               |.||..||         :..:.|.:.            |||.             ::...|.
Zfish  1505 ---TTVEVGSNARQFTVTGLMPESAYVFQITARTLQGWGPADEAI-------------VITTEKR 1553

  Fly  7863 DRLTAQQCLASKWLSQRPDDSLSNNKICTDKLKKFIIRRKWQKTGN--------AIRAL------ 7913
            :|..|.:.|..      |...:.:.|          :|..|...|:        .::.|      
Zfish  1554 ERPQAPRRLTV------PQKGVESYK----------LRLHWMAGGDGSSPVRYFTLQTLELPDGD 1602

  Fly  7914 GRMANLSVSRRNSAIAMGVLSSPRPSIS-GLGMLTTSAIGSGTSSQMTSLHEEEDDFSGEMPPVE 7977
            .:....|:...||:..:..|   :|..| ...|:.|:.:|....|:.|.......|..||.|   
Zfish  1603 WKTHTSSIPHNNSSWEVDRL---KPYTSYKFRMMATNDVGDSAFSKETEPVTTLQDVPGEAP--- 1661

  Fly  7978 KRTVLKLRDKSQCS---------ERSDSGYSECSNCSGAQETLLLSLAKSKLEAIAKASTLPTVV 8033
              .:|.::..:..|         |.:.:|             :|:.......|..::::  |.||
Zfish  1662 --VILLVKPSTTTSVIVQWQPPAEGTVNG-------------ILVGYRVYYRELPSESN--PKVV 1709

  Fly  8034 HDTEQ-PVSLELPTK-------GEAIMRSDFTNTIKMRKKSLEDSA---AREKPRSKP------Q 8081
            ..|.| .:|||...|       ..::...:.|...|.|:.::..:|   ..|.|.|.|      :
Zfish  1710 QSTNQSTISLEFRAKSTFKTVSSPSLTEFELTQLSKYRRYAIVMTAFNVVGESPSSAPVEVFVGE 1774

  Fly  8082 VKPLLCESKLKV-----SQLKDRFQVSP 8104
            ..|.:....::|     :||...:|..|
Zfish  1775 AAPSVAPQNIQVKSVSSNQLDVEWQPPP 1802

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Strn-MlckNP_001261019.1 IG_like 51..127 CDD:214653
Ig <69..>112 CDD:299845
I-set 137..226 CDD:254352
I-set 235..314 CDD:254352
Ig_2 244..314 CDD:290606
I-set 438..513 CDD:254352
Ig 454..510 CDD:143165
I-set 537..626 CDD:254352
Ig 555..618 CDD:299845
I-set 636..713 CDD:254352
Ig 652..712 CDD:143165
SMC_N <2190..2854 CDD:280601
I-set 5300..5388 CDD:254352
IGc2 5313..5378 CDD:197706
IG 5412..5482 CDD:214652
IGc2 5413..5481 CDD:197706
I-set 5542..5627 CDD:254352
Ig 5556..5621 CDD:143165
Ig 5654..5721 CDD:143165
I-set 5784..5874 CDD:254352
IGc2 5797..5864 CDD:197706
I-set 5887..5970 CDD:254352
Ig 5902..5966 CDD:143165
I-set 5997..6086 CDD:254352
Ig 6026..6083 CDD:143165
I-set 6097..6187 CDD:254352
Ig 6114..6187 CDD:299845
FN3 6216..6310 CDD:238020
I-set 6321..6412 CDD:254352 18/90 (20%)
Ig 6328..6412 CDD:299845 16/83 (19%)
I-set 6442..6531 CDD:254352 22/93 (24%)
Ig 6459..6528 CDD:143165 19/73 (26%)
I-set 6541..6632 CDD:254352 28/103 (27%)
IGc2 6555..6622 CDD:197706 24/76 (32%)
I-set 6662..6754 CDD:254352 27/99 (27%)
Ig 6679..6751 CDD:143165 20/78 (26%)
I-set 6779..6868 CDD:254352 27/93 (29%)
IGc2 6793..6858 CDD:197706 21/69 (30%)
Ig 6938..7022 CDD:299845 19/87 (22%)
I-set 6939..7028 CDD:254352 22/92 (24%)
IG 7075..7140 CDD:214652 14/85 (16%)
Ig 7075..7140 CDD:143165 14/85 (16%)
IG 7167..7239 CDD:214652 14/79 (18%)
Ig 7173..7239 CDD:143165 13/73 (18%)
Ig 7392..7475 CDD:299845 16/85 (19%)
IG 7406..7475 CDD:214652 12/71 (17%)
FN3 7489..7588 CDD:238020 36/110 (33%)
S_TKc 7620..7876 CDD:214567 55/310 (18%)
STKc_MLCK 7626..7876 CDD:271005 55/304 (18%)
sdk1bXP_017211454.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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