DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Strn-Mlck and Dscam3

DIOPT Version :9

Sequence 1:NP_001261019.1 Gene:Strn-Mlck / 36753 FlyBaseID:FBgn0265045 Length:8255 Species:Drosophila melanogaster
Sequence 2:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster


Alignment Length:2466 Identity:489/2466 - (19%)
Similarity:811/2466 - (32%) Gaps:706/2466 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  5883 LPSTFTQPIRDTYSLNENELVLDCRVRGQPRPEIQW----------IKGTEPIEASEKFK-PSDQ 5936
            :|:...:|.......|:....:.|...|.|.|.:.|          :.|...|..:.... |...
  Fly    37 VPTFLLEPAPRLLFGNDTGAQVTCTAHGSPPPLVTWVLRDGSLATQVPGLRKISGNGTLHFPPFL 101

  Fly  5937 ADGYAKLVIVNPTEKDSGIYWCVARNEGAENKISHQVDFKGRQHYSLEKTHGFFHRDPNKPHFLL 6001
            |..|.       |:.....|.|.|.|| |...:|..|           :.|....|     .|.:
  Fly   102 AQYYR-------TDVHEATYRCRASNE-AGTVLSRNV-----------QVHAVVRR-----QFHV 142

  Fly  6002 PLGNQTVCNGGTVAISAEFMETSTP-IEV-KWLRDRRV-------VDGPNVKALADRGVYTLTIM 6057
            .:.|..|..|.:..|.....|...| :.| .|.|...:       |.|..|...|...:|..::.
  Fly   143 HVENTEVYLGNSALIKCAIPEYVRPYVRVASWHRGEEILLPDLSDVAGRYVVLAASGDLYVRSVR 207

  Fly  6058 NAGPEVEGTYTCRASNAF-GRIESNVNVDVAVGAEKDERPPLFLSRPDTEMKIAVGDPFSLSFRI 6121
            :....::  ::|..:|.. |..:.:..|.:.|........|....:|..|:.:..|:...|...|
  Fly   208 SEDGLMK--FSCLVTNTLNGERQRSDAVMLQVKELSKNLAPRTTQKPVMEIHVERGNDVHLPCNI 270

  Fly  6122 AGDPKPKLTFMKGTKD-----ITQSDRV--SKEVSDDYTRFSVQQAQISDSGTYFVVARNNFGTD 6179
            .|:|.|..|:.:.:..     |..|.||  |:      |...::.|...|:|.:...|.|.||..
  Fly   271 QGNPFPIFTWYRVSDSAALYPIPSSQRVILSR------TLLLIKNADERDAGKWICQASNQFGEQ 329

  Fly  6180 RIFVTVTVNPRARSATPTQPRWGLPLDSYSDTSYFRDPPGCISTEPLVVDSGPTHISLSW---GK 6241
            ||.:.::||.........|    :.:.:...|:.|    .|.:|       |....::.|   ||
  Fly   330 RIEIRLSVNSYVSVHILPQ----VQIVNSGGTANF----NCTTT-------GSAIDAIDWLHNGK 379

  Fly  6242 PVSANSAPVMAYKVEAWVVGHEGGAYWRELGLTPINSFDAFNLKPNVEYH----FRVTPKNRYGW 6302
            |:.||:         |...|.:...:..:..|          |..||...    ::...:|:.. 
  Fly   380 PLQANN---------ALTTGRDNIRFLSKSSL----------LVQNVGRRDRGVYQCLVENQRA- 424

  Fly  6303 GPTVQTSSPLQVGGVECLPEFV------KILPGQAKALLGSSFTLQCNMRGAPRPQVTWFKDG-- 6359
              :.|..:.|::|  :.:||.:      .:.||..       .:|:|:..|:|.||..|..|.  
  Fly   425 --SAQAMAELKLG--DTVPELIYTFIEQNVRPGPL-------ISLKCSASGSPPPQFAWLLDSQP 478

  Fly  6360 IQLSSSSERVKIRQI----GSTCA-LTIATVSELDSGRYTCEATNSKGRVSTFARLQVVSDSRIY 6419
            |...|...|..|.|.    |...: |.|:.|...|.|.|.|.|:||.|.|...|||.|.....: 
  Fly   479 IMDVSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNVYGPPYV- 542

  Fly  6420 EADSRLKEIAHGRNVADVGDSLPIFTMRLRDRRVQVTYPVRLTCQIVGYPVPEILWYK-DDELIH 6483
            .|...:|.:|        |:.:.:.                  |...||||.:|.|.| ..||..
  Fly   543 RAIGPIKAVA--------GEDIIVH------------------CPFAGYPVEQIRWEKAHQELTT 581

  Fly  6484 TDRKHLISAE--GQFFTLEIAATTLDDSGTYTCLARNELGSVSCHCTLVVDKGIRAYISPDFYVP 6546
            ::...|.|..  ||.....:....  |.|.|||:.|:..|..:..     |..:.....|    .
  Fly   582 SNHYELASVADGGQLVIKNVEPGR--DQGIYTCIVRSRAGEEARR-----DMQLNVNSPP----V 635

  Fly  6547 LDPFYI---FREGSEIRLSTKVEA--YPSVGVTWHRNGMRLRPSRRLTATLDSNGYVELIIAEAT 6606
            ::||..   .:||...:::..|.:  .| :..:|.::...:..|.::|...: ..|..|:..:.:
  Fly   636 IEPFKFPKNLQEGGRAQITCAVSSGDMP-IYFSWKKDDSSIPSSLQITEKKE-EFYSLLVFKDIS 698

  Fly  6607 VRDAGIYVCVASNVVGKVETICRVAVEEAENKAVAPQRSLEIPSIKTDDLPYSKEPLFVVKPRSS 6671
            .|.:|.|.|.|||...||.....:.|.      |||:...|                    |..:
  Fly   699 ARHSGKYTCYASNAAAKVNYTAELQVR------VAPRWRYE--------------------PMDT 737

  Fly  6672 EAYEGDNVIIFCEVVGDPKPEVVWLRDFLNPEYYKDAPHFRRIGDGPE---------YRLEIPSA 6727
            ....|:.:.|.||..|.|.|.:.|               |:..|.|.:         :.|.:..|
  Fly   738 AIMLGNTISINCEAEGYPIPTITW---------------FKGQGKGSKDFKPLSMRNHSLLLNLA 787

  Fly  6728 KLDFTGTYSVIASNCHGEA-KAVISLQIFAKDILNKSRMDKVHTRHGNIETLPRFVRNLRNLRCC 6791
            ..:..|.|...|:|..|.. |..|.:                     |:....||.::.||:...
  Fly   788 TDNDEGYYMCQATNEIGAGLKKTIRI---------------------NVNEPARFEQSARNISSR 831

  Fly  6792 DGDAISLECHVEADPEPFII-W-EKDGHV-----------MPSDRDYVMSFDGTKATLSIPRVYP 6843
            ..|.::|:||.:.| ||..| | :.:|.:           |.:::       |..:.|:|.....
  Fly   832 RNDPVTLDCHAKGD-EPITIGWTQNNGRIDLNNFRFSIAEMKTEK-------GVDSQLTIGHSDR 888

  Fly  6844 EDEGEYTCVAKNSVGRSLSSACIIV----DVPEEKE--NMLSR---------------------- 6880
            .|.|.|.|:|:|..||:.....:.|    |.|...|  .:.||                      
  Fly   889 HDSGVYRCIAENPYGRAEQIIFLAVQERPDTPSHLEIFEVGSRTVKLSWRRPFDGNSPVLSYLVQ 953

  Fly  6881 -----------QLARPSGLLSAHSTPRSTPRSTPARSF-SPLRLS--------YRTSSIDLSGVA 6925
                       .||...|..:.|....|.|.::.:||: |.||.|        ..|..|.:..:.
  Fly   954 YQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRSYDSDLRESAIVAGLTPATTFLIRMQAIN 1018

  Fly  6926 ERRRSDARNAIT------APKFLAIPYNRVVEEGDSVRFQCAISGHPTPWATWDKDGLIVTPTPR 6984
            |..||....||.      ||  ...|.|..|:.|.  ..:..::....|..:|  :|.::..|..
  Fly  1019 EIERSAYTEAIVLKTQEEAP--TEAPSNVQVQTGG--ESELIVTWQIPPRESW--NGELIGYTVN 1077

  Fly  6985 IAVKEIDDLRIIEIDEVTFDDAGLYRVTLENDFGRIEATARLDVIRSSRYSKSPSVRSVRASSSR 7049
            .: :|..::..|.:...:.      :.|:.:.:...:||.| .:.:.|||  :.::|::.:..| 
  Fly  1078 CS-EEKQNINFISVVNSSL------KSTIVSGWATTKATLR-GLRKYSRY--AVTIRAMNSFGS- 1131

  Fly  7050 RNAHLYRRIMGP-STAIGGRMALASGYRGSSVPSVRFYHNDVELEASERVHILLQDSMALLI--V 7111
                      || |.||.|..|       ..||..          |.:.|:.....|.:|.|  :
  Fly  1132 ----------GPWSAAIFGTTA-------EGVPEA----------APQNVNCTALSSQSLKISWL 1169

  Fly  7112 DNVTREDEGQYTCIISGD---HDPLI-------------TSTTVTF----HD-SNTEIRRRRAVI 7155
            :...:...|    ||.|.   :.|::             ||...|:    |. ||..||      
  Fly  1170 EPPLQFHGG----IIQGYKILYRPIVHQIDFPAKLEIKRTSNLETYLHTLHKASNYSIR------ 1224

  Fly  7156 TERLPEITKSLEGEVI---DLCCSIECDEPYSYVWLRNGEILPDSDEFNYIDHGNGRLCLRINDA 7217
                 .:..:..|:.:   .|.|..:.|.|.:...::...:..||...:::...|....:.....
  Fly  1225 -----VLAYTATGDGLASHPLFCQTDDDVPDAPAAIKAAALTADSILISWLTPKNRNGIISHYTV 1284

  Fly  7218 FDIDSGIY-SCQVFTSDINDSTSDSTFDSHSIC--SLINSGCSDCSSSGELCVLERDLRGQDEEC 7279
            :..::|.. ..:.....::::....||:|.|:.  .:.....|..:|.||         |:....
  Fly  1285 YSREAGRKGQAKTHMVRVDENGYPVTFESRSLAENQMYEFWVSASTSVGE---------GEPTSV 1340

  Fly  7280 V-QLLKTPLPVVCASGDEALFYARVFPCDAEADWYLNGQLLAQADDSLNMTLESYPENGIRLLRM 7343
            : |...|..|...||                     .||::.:|..: .:.||            
  Fly  1341 IAQATNTRAPARIAS---------------------FGQVVRKAVGT-GLVLE------------ 1371

  Fly  7344 RDVTASRSGEICLQVKHPQAEFRRIPTTRTYTSLLVLPAIRGNSSSSSLAARSCILTRPEDCTAL 7408
                       ||.|.:        ||.|                     ||.....||      
  Fly  1372 -----------CLAVGN--------PTPR---------------------ARWLTRDRP------ 1390

  Fly  7409 IGGHVRLSVRYEPFPGTKVIWYKACHPIVESSNVTIRTTSQQSTLYITDISADDSGKYTVEVMND 7473
                    |.:.||       |:               .:.:..|.|..:....||.||....|.
  Fly  1391 --------VTFSPF-------YE---------------VTNEGNLKIHRVEGSLSGNYTCTANNL 1425

  Fly  7474 YGVEAAAASVAVEGPPEPPSGQPSVS-LGPDRVAVAWCGPPYDGGCMITGFIIEMQTIGDENCDE 7537
            :|.:.....|....||..|  |..|. ...|.:.|:|..|. |||..:.|:.|...|.|      
  Fly  1426 FGSDEIQYQVIAMKPPSAP--QIIVQYASADSIRVSWDAPD-DGGAPLQGYTISYHTAG------ 1481

  Fly  7538 DSWQQVTRVVDSLAYTVKNLQPERQYRFRVRAENIHGRSAPGQASELVQITNTPQRSTSSDASDR 7602
            :||.....:.::.|:|:..|:...||..::.|.|:.|   .|.|||.:.:....:.|.:.:|::.
  Fly  1482 ESWSITELLPENNAFTISGLKCGNQYIIKMSAHNMVG---SGVASEEINVWTKGKASQAPNANEL 1543

  Fly  7603 FGQATVSV-------QSGGDFKSRFEIIEE-LGKGRFGIVYKVQERGQPEQ-------LLAAK-- 7650
            .......|       |:||.....|.|... ||..|:.:|.......:..:       .|.||  
  Fly  1544 IATNATCVNLKLSSWQNGGCSIHHFSIEHRPLGDIRWTVVTSDISNAEENRENLIFCDFLPAKWY 1608

  Fly  7651 VIKCIKSQDRQKVLEEISIMR------ALQHPKLLQLAASFESPREIVMVMEYI-----TGGELF 7704
            .::...:.|..|..|......      .:..|.:.        |.|..::...|     |.|:.|
  Fly  1609 QLRISATNDAGKTTEHYHFSTTNIDGITIPPPSVF--------PSENDLMNNLINSTNPTSGDWF 1665

  Fly  7705 ER-VVADDFTLTEMDCILFL---RQVCDGVAYMHGQSVVHLDLKPENIMCHTRTSHQ------IK 7759
            .. :|....|::.:...|.:   |.:|..:|..:....:..|.|.::   ..|.:.|      :|
  Fly  1666 ATLIVVVIITVSIITIALTIKHRRTLCGPIAEGYESRTLPGDYKEDH---ENRRNQQVYSASPVK 1727

  Fly  7760 IIDFGLAQRLDTKAPVRVL------FGTPEFIPPEIISYE-PIGFQSDMWSVG--------VICY 7809
            .:|.|....:...:|....      .|.|...|...::.: |:.:.....:.|        ...|
  Fly  1728 TVDKGNESEMYEISPYATFSVNGGRTGAPAKTPTRAVAAQTPLDYTMQFKTFGHPEGENLNATAY 1792

  Fly  7810 VLLSGLSPFMGDTDVETFSNITRADYDYDDEAFDCVSQEAKDFISQLLVHRKEDR--LTAQQCLA 7872
            .||    |..|...|::.|:..:..| |:.|....:|:...........|.|:..  .:|:...|
  Fly  1793 PLL----PSSGFGHVKSKSSWHKQRY-YNTEDESTLSKSMTIVAGSQAGHSKKSNGGRSAKSSAA 1852

  Fly  7873 SKWL--------SQRPDDSLSNNKICTDKLKKFIIRRKWQKT--GNAIRALGRMANLSVSRRNSA 7927
            ...:        |..|....||       :..:.:..|..::  |.|:..:.|..:.:.|..:. 
  Fly  1853 CSGVVAGSESDTSISPSTEFSN-------MPTYRVPCKSSRSSDGRAVVDMFRPDSSTESNNDQ- 1909

  Fly  7928 IAMGVLSSPRPS--------ISGLGMLTTSAIGSGTSSQMTSLHEEEDDFSGEMPPVEKRTVLKL 7984
                  .||.|.        :.|:||  ...:|.|....:          .|...|.|||:.   
  Fly  1910 ------GSPAPERRHNTPRHVLGMGM--AMGLGGGGGGGV----------GGGNGPAEKRSA--- 1953

  Fly  7985 RDKSQCSERSDSGYSECSN-------CSGAQETL--------LLSLAKSKLEAIAKAST------ 8028
               .|.|.:..|...:.||       |.|:..:|        ..|||.| :.|:|.:..      
  Fly  1954 ---GQRSRKHGSAAQQPSNQTLERRKCPGSSNSLDSEVDAETAASLAAS-IAAMAGSGAGADLSG 2014

  Fly  8029 ---LPTVVHDTEQP------------VSLELPTKGEAIMRS-DFTNTIKMRKKSLEDSAAR 8073
               .|...||..:|            :.||:    :.:|.| ......||.::.|....||
  Fly  2015 GFRPPAGFHDGREPGDHSDCEREQRALDLEV----QRVMESTGDAQLAKMDREELTSLLAR 2071

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Strn-MlckNP_001261019.1 IG_like 51..127 CDD:214653
Ig <69..>112 CDD:299845
I-set 137..226 CDD:254352
I-set 235..314 CDD:254352
Ig_2 244..314 CDD:290606
I-set 438..513 CDD:254352
Ig 454..510 CDD:143165
I-set 537..626 CDD:254352
Ig 555..618 CDD:299845
I-set 636..713 CDD:254352
Ig 652..712 CDD:143165
SMC_N <2190..2854 CDD:280601
I-set 5300..5388 CDD:254352
IGc2 5313..5378 CDD:197706
IG 5412..5482 CDD:214652
IGc2 5413..5481 CDD:197706
I-set 5542..5627 CDD:254352
Ig 5556..5621 CDD:143165
Ig 5654..5721 CDD:143165
I-set 5784..5874 CDD:254352
IGc2 5797..5864 CDD:197706
I-set 5887..5970 CDD:254352 19/93 (20%)
Ig 5902..5966 CDD:143165 16/74 (22%)
I-set 5997..6086 CDD:254352 19/98 (19%)
Ig 6026..6083 CDD:143165 12/66 (18%)
I-set 6097..6187 CDD:254352 25/96 (26%)
Ig 6114..6187 CDD:299845 21/79 (27%)
FN3 6216..6310 CDD:238020 17/100 (17%)
I-set 6321..6412 CDD:254352 33/103 (32%)
Ig 6328..6412 CDD:299845 31/90 (34%)
I-set 6442..6531 CDD:254352 21/91 (23%)
Ig 6459..6528 CDD:143165 21/71 (30%)
I-set 6541..6632 CDD:254352 21/95 (22%)
IGc2 6555..6622 CDD:197706 16/68 (24%)
I-set 6662..6754 CDD:254352 21/101 (21%)
Ig 6679..6751 CDD:143165 18/81 (22%)
I-set 6779..6868 CDD:254352 26/101 (26%)
IGc2 6793..6858 CDD:197706 20/77 (26%)
Ig 6938..7022 CDD:299845 13/83 (16%)
I-set 6939..7028 CDD:254352 15/88 (17%)
IG 7075..7140 CDD:214652 14/82 (17%)
Ig 7075..7140 CDD:143165 14/82 (17%)
IG 7167..7239 CDD:214652 9/75 (12%)
Ig 7173..7239 CDD:143165 8/66 (12%)
Ig 7392..7475 CDD:299845 15/82 (18%)
IG 7406..7475 CDD:214652 11/68 (16%)
FN3 7489..7588 CDD:238020 29/99 (29%)
S_TKc 7620..7876 CDD:214567 53/303 (17%)
STKc_MLCK 7626..7876 CDD:271005 51/296 (17%)
Dscam3NP_996226.2 IG 56..133 CDD:214652 19/95 (20%)
Ig 56..125 CDD:143165 17/76 (22%)
I-set 246..337 CDD:254352 25/96 (26%)
Ig 264..334 CDD:143165 21/75 (28%)
I-set 345..433 CDD:254352 20/124 (16%)
Ig 358..431 CDD:143165 18/105 (17%)
Ig 456..533 CDD:143165 26/76 (34%)
IGc2 553..619 CDD:197706 21/85 (25%)
I-set 634..724 CDD:254352 21/95 (22%)
ig 645..712 CDD:278476 15/68 (22%)
IG_like 734..815 CDD:214653 21/116 (18%)
Ig 745..815 CDD:299845 19/105 (18%)
I-set 820..913 CDD:254352 26/100 (26%)
Ig 838..920 CDD:299845 23/89 (26%)
FN3 917..1033 CDD:238020 24/115 (21%)
FN3 1040..1142 CDD:238020 25/126 (20%)
fn3 1150..1237 CDD:278470 19/101 (19%)
FN3 1263..1345 CDD:238020 14/90 (16%)
Ig 1350..1436 CDD:299845 30/195 (15%)
IG_like 1358..1436 CDD:214653 26/166 (16%)
FN3 1441..1530 CDD:238020 29/100 (29%)
FN3 1542..1620 CDD:238020 14/77 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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