DRSC/TRiP Functional Genomics Resources

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Protein Alignment Strn-Mlck and Hmcn1

DIOPT Version :9

Sequence 1:NP_001261019.1 Gene:Strn-Mlck / 36753 FlyBaseID:FBgn0265045 Length:8255 Species:Drosophila melanogaster
Sequence 2:NP_001258221.1 Gene:Hmcn1 / 289094 RGDID:1564772 Length:5635 Species:Rattus norvegicus


Alignment Length:4122 Identity:857/4122 - (20%)
Similarity:1348/4122 - (32%) Gaps:1300/4122 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  5109 KVATDTKSQTVEVSEIV--LEKISEEKAE--ESQKVELK---------DSEAKSKKAKVLEKKST 5160
            |:.:.|   ||.|:.:|  |..||..||.  |.|.:.|.         ......|.:.:|.:...
  Rat   875 KIQSQT---TVTVTGLVAPLIGISPSKASVIEGQPLTLPCTLLAGNPIPERRWMKNSAMLVQNPY 936

  Fly  5161 LKEKLDEN---DKKQKEDG-----------ATNKSQKAEAADVVPEKISEEKVAEIKTPEPMDSK 5211
            :..:.|.:   ::.:.:||           .||....:.|..|:|.....:::  :.|.|.:...
  Rat   937 ITVRSDGSLHIERVRLQDGGEYTCVASNVAGTNNKTTSVAVHVLPTIQHGQQI--LSTIEGVPVT 999

  Fly  5212 AKSKPDGLPADEKSHGAKVSESVPVKNEAEKTDQLSAKKPTVLDEDLVVPKRKPYLAEQTADSIS 5276
            ...:..|:|          ..|:....:.|.....:||.....|..|.|....   :|::.:.|.
  Rat  1000 LPCRASGIP----------KPSITWSKKGELISTGNAKFSAGADGSLYVVSPG---SEESGEYIC 1051

  Fly  5277 LQTYKSMDSEYKDRKESRSAKRKPTVDIQLT----------NRNTASGSDLKLTCGLSGHEMN-- 5329
            ..|           ..:..||||    :|||          .|..:....::::. |:|.|..  
  Rat  1052 TAT-----------NAAGYAKRK----VQLTVYVRPRVFGDQRGLSQDKPVEISV-LAGEEATLP 1100

  Fly  5330 ----------VQWFKDNCPIENGAKYRRTLNDGLSCLEIKSAELGDSGIYRCIASNQNGEVETSC 5384
                      :.|.||:..|...:.....|..|  .::|....:.|||:|.|:|:|..|.|..|.
  Rat  1101 CEAKSLPPPIITWAKDSQLISPFSPRHTFLPSG--SMKITETRISDSGMYLCVATNIAGNVTQSV 1163

  Fly  5385 LVTIYEAPSSKFGTPPIFTRNIRDAYHSQGNQLTLECKVSGSPKPHIYWQRDNTLLPIEGTKYQY 5449
            .::::..|..:.|.        |......|.::.:.|...|||.|.|.|.:....:|..|.  |:
  Rat  1164 KLSVHVPPKIQHGN--------RHLKVQVGQRVDIPCNAHGSPPPVITWFKSGRPMPFNGV--QH 1218

  Fly  5450 EEQSDGIKLLTINNFGSNDSGLYTCYAESENG--QMKISKFVQASDYV-----------RERIAD 5501
            ....||  :|||.....:|:|.|||.|.:..|  :.:::..||....|           :||:|:
  Rat  1219 PGSPDG--MLTIEQTTLSDAGTYTCTATNIAGSDEAEVTLHVQEPPTVEDLQPPFNTPFQERLAN 1281

  Fly  5502 K------------KPIDKVI---QEIKRDESSSAAANDTA---------------------AAKA 5530
            :            ||..|.:   :|:...|...:...|.|                     .|..
  Rat  1282 QRMAFPCPAKGTPKPTIKWLHNGKEVTGQEPGVSILEDGALLVIASVTPLNNGEYICVAVNEAGT 1346

  Fly  5531 KAREAKLRLNLETSLK------TMTIGSGNKAQLICYVTGIIEDV-HWLRNDERVTKDARHKIYN 5588
            ..|:..||:::...:|      .:::.....|.|.|.|.|....| .|.::|.:||:.:..:|.|
  Rat  1347 TERKYNLRVHVPPVIKDKEHVSNVSVLVNQLASLYCEVEGTPSPVIMWYKDDIQVTESSTVQIVN 1411

  Fly  5589 INGAISLEIYDARVEDSGHYRCVVKNSRQTVESAGQLSVL----DQSTGKLPESFSSGIIESYDD 5649
             ||.| |:::.|..||:|.|.|...|...|.:....::||    .|..|. |...|..:      
  Rat  1412 -NGKI-LKLFKASAEDTGRYSCKAINIAGTSQKDFSVNVLVPPSIQGAGS-PNEVSVVL------ 1467

  Fly  5650 QRNEIVLSCQVIGR--PSVSWMRD-------DHSICNNRYRTIEEPGGVRKLVIRNPISSDCGIF 5705
             .:.|.|.|.|.|.  |::.|.:|       |.:|      .:.:.|  :.|.:||...||.|.:
  Rat  1468 -NHNITLQCPVRGTPFPAIHWFKDGKPLFLGDPNI------ELSDRG--QNLHLRNARRSDKGRY 1523

  Fly  5706 ACYAEHEDRIDSTSITIKAADLKRLI---------NVSQE------------------EIPSIGD 5743
            .|..       |.:...:|.|:|..:         ||:.|                  .:|:|  
  Rat  1524 QCSV-------SNAAGKQAKDIKLTLYVPPSIKGGNVTTEISALLNSVVKLECETRGLPVPAI-- 1579

  Fly  5744 HESTPWSRSQSHLSSGSQ---VNGNGELHRAGDRV---------LRNV-GKGKPLFH-------- 5787
                .|.:....::|.||   ::....||....:|         ..|| |..:..||        
  Rat  1580 ----TWYKDGQVVTSSSQALYIDKGQFLHIPRAQVSDSATYTCHASNVAGTAEKSFHVDIYVPPI 1640

  Fly  5788 -----TLLHDRTVSEGANLRLVCSVSGDENTHIEWLKNHKPLPRSDNRYQTVYLN-GEASLEIFA 5846
                 |....:.|..|.:|.|.|...|:....:.|||:..|:..|||    :::. |...|||.:
  Rat  1641 IEGDLTTPSSKQVVVGQSLVLECKAVGNPPPVLTWLKDGVPVKASDN----IHIEAGGKKLEILS 1701

  Fly  5847 AVADDSGNYTCCATNDFGESLTHAQLRVYKNFKEAPLPSTFTQPIRDTY--SLNENELVLDCRVR 5909
            |:..|.|.|.|.||:..||       |..|...:..:|.........:|  .|..|.|.|||:|.
  Rat  1702 ALEVDRGQYICVATSVAGE-------REIKYEVDVLVPPAVEGGDETSYFIVLANNLLELDCQVS 1759

  Fly  5910 GQPRPEIQWIKGTEPIEASEKFKPSDQADGY------AKLVIVNPTEKDSGIYWCVARNEGAENK 5968
            |.|.|.|.|:||.:.|         |:.||:      .||||......|:|:|.|||.|...:.:
  Rat  1760 GSPPPTIMWLKGGQLI---------DERDGFKILLSGRKLVIAQAQVSDTGLYQCVATNVAGDRR 1815

  Fly  5969 ISHQVDFKGRQHYSLEKTHGFFHRDPNKPHFLLPLGNQTVCNGGTVAISAEFMETSTPIEVKWLR 6033
            ...:|.               .|..|......||  .:||.....|::.........| .:.||:
  Rat  1816 KEFEVT---------------VHVPPTIKSSDLP--EKTVVRYKPVSLQCIANGIPNP-SITWLK 1862

  Fly  6034 DRRVVD-GPNVKALADRGVYTLTIMNAGPEVEGTYTCRASNAFGRIESNVNVDVAVGAEKDERPP 6097
            |.:.|: .|....:...| ..|.|..|..|..|.|||.|:||.|....:..:.|      .|.|.
  Rat  1863 DDQPVNTAPGNLRIQSSG-RVLQIAKALLEDAGRYTCVATNAAGEAHQHTQLHV------HEPPS 1920

  Fly  6098 LFLSRPDTEMKIAVGDPFSLSFRIAGDPKPKLTFMKGTKDITQSDRVSKEVSDDYTR----FSVQ 6158
            |..........:.|.:|..|..:..|.|.|.||:.|.:..:..|      .|..:.:    ..:.
  Rat  1921 LDDGGKMLNESVVVNNPIQLECKATGSPVPVLTWYKDSHPLAGS------TSATFLKRGQILEIG 1979

  Fly  6159 QAQISDSGTYFVVARNNFGTDRIF-----------------VTVTVNPRAR---------SATPT 6197
            .|||||:|.|..||.|:.|...:|                 |.|.||..||         :.:.|
  Rat  1980 SAQISDAGIYKCVAINSAGATELFYSLQVHVPPSISGSSSMVEVVVNNLARLECEARGIPAPSLT 2044

  Fly  6198 QPRWGLPLDSY--------------------SDTSYF------------RD-------PPGCIST 6223
            ..:.|.|:.|:                    |||..:            ||       ||..:..
  Rat  2045 WLKDGSPVSSFSNGIQVLSGGRILALTSAQMSDTGRYTCVAVNAAGEKQRDFDLRVYAPPNIMGE 2109

  Fly  6224 EPLV-------------VDSGPTHISLSW---GKP--------VSANSAPVMAYKVEAWVVGHEG 6264
            |..|             .|:.|.. :|.|   |:|        :|.|.:.:|....:|    .:.
  Rat  2110 EQNVSVLISQTVELFCQSDAVPPP-TLMWFKDGRPLLKRPGLSISENGSVLMIEDAQA----GDT 2169

  Fly  6265 GAYWRELGLTPINSFDAFNLKPNVEYHFRV---TPKNRYGWGPTVQTSS---------------- 6310
            |.|          :.:|.|:....|.::.|   .|.:.||....||.::                
  Rat  2170 GRY----------TCEATNVAGKTEKNYNVNIWVPPSIYGSDELVQLTAIEGNLITLLCESSGIP 2224

  Fly  6311 ----------------------------PLQVGGVE--------CL---------PEF---VKIL 6327
                                        .||:...|        |:         .|:   |.|.
  Rat  2225 PPNLTWKKKGSLVLADAAGRVHILSGGRRLQISIAEKADAGLYTCVASNVAGIAKKEYNLQVYIR 2289

  Fly  6328 PGQAKA---------LLGSSFTLQCNMRGAPRPQVTWFKDGIQLSSSSERVKIRQIGSTCALTIA 6383
            |..|.:         :.|.|.:|:|.::|.|:|.|||.|||..| |..:.|:|...|....|...
  Rat  2290 PSIANSGSHRPEITVIRGRSISLECEVQGIPQPTVTWMKDGRPL-SKGKGVEILDEGRVLQLKNV 2353

  Fly  6384 TVSELDSGRYTCEATNSKGR--------------------------------------------- 6403
            .||  |:|||.|.|.|..|.                                             
  Rat  2354 HVS--DTGRYVCVAVNVAGMTDKRYDLSVHVPPSIIGNHGVPENISVVEKSSVSLTCEASGIPLP 2416

  Fly  6404 ----------VSTFARLQVVSDSRIYEADSRLKEIAHG-----RNVADVGDSLPIFTM------- 6446
                      ||..:.::::|..|:........|.|..     ||.|  |:...:|.:       
  Rat  2417 SITWLKDGWPVSLGSSVKILSGGRMLRLMQTRPEDAGQYTCIVRNAA--GEDRKMFGLSVLVPPH 2479

  Fly  6447 -----RLRDRRVQVTYPVRLTCQIVGYPVPEILWYKDDELIHTDRKHLISAEGQFFTLEIAATTL 6506
                 .|.|.:::....|.|||::.|.|||:|.|:||.:|:..|..|.:.:.|:|  |:|....:
  Rat  2480 IVGDNTLEDIKIKEKQSVTLTCEVRGNPVPQITWHKDGQLLQEDEVHHMMSGGRF--LQITNAQV 2542

  Fly  6507 DDSGTYTCLARNELGSVSCHCTLVVDKGIRAYISPDFY------VPLDPFYIFREGSEIRLSTKV 6565
            ..:|.|||||.|..|..|...:|.|      ::||...      .|.|...|.  .|...|..:.
  Rat  2543 SHTGRYTCLASNIAGDKSKSFSLNV------FVSPTIAGVDSDGSPEDVIVIL--NSPTSLVCEA 2599

  Fly  6566 EAYPSVGVTWHRNGMRLRPSRRLTATLDSNGYVELIIAEATVRDAGIYVCVASNVVGKVETICRV 6630
            .:||...:||.::|..|..||.|...   .|...|.|..|...:||.|.|||:|..|::      
  Rat  2600 YSYPPATITWFKDGAPLESSRNLRIL---PGGRTLQILNAQEDNAGRYSCVATNEAGEM------ 2655

  Fly  6631 AVEEAENKAVAPQRSLEIPSIKTDDLPYSKEPLFVVKPRSSEAYEGDNVIIFCEVVGDPKPEVVW 6695
             ::..|.|...|      |.||..||..:.     :.|:..:.....::.:.||....|...:.|
  Rat  2656 -IKHYEVKVYIP------PIIKKGDLLGTG-----LSPKEVKIRVNSSLTLECEAYAIPSASLRW 2708

  Fly  6696 LRDFLNPEYYKDAPHFRRIGDGPEYRLEIPSAKLDFTGTYSVIASNCHGEAKAVISLQIFAKDIL 6760
            .:|   .:..|...|.....:|  :.|:|..|::..||.|:.:|||..||.:....:        
  Rat  2709 YKD---GQPLKSDHHVNIAENG--HTLQIKEAQISDTGRYTCVASNLAGEDELDFDV-------- 2760

  Fly  6761 NKSRMDKVHTRHGNIETLPRF-----VRNL----RNLRCCD---GDAISLECHVEADPEPFIIWE 6813
                         ||:..|.|     :.|:    |:....|   .:.|||.|...|.|.|.:.|.
  Rat  2761 -------------NIQVPPSFQKLWEIGNMLDTGRSGEAKDVIINNPISLHCETNAAPPPTLTWY 2812

  Fly  6814 KDGHVMPSDRDYVMSFDGTKATLSIPRVYPEDEGEYTCVAKNSVGRSLSSACIIV---------- 6868
            |||..:.|. |.|:...|.: .|.|||...||.|.|||||.|..|.......|.|          
  Rat  2813 KDGRPLTSS-DRVLILPGGR-VLQIPRAKVEDAGRYTCVAVNEAGEDSLQYDIHVLLPPVIKGAN 2875

  Fly  6869 -DVPEEKENMLSRQLARPSGLLSAHSTPRSTPRSTPARSFSPLR-------------LSYRTSSI 6919
             |:|||...::::     |..:...|:....||:...:...||.             |....:.|
  Rat  2876 SDLPEEVTVLVNK-----SAQMECSSSGSPAPRNFWQKDGQPLLEDEHHKFLSDGRVLQILNAQI 2935

  Fly  6920 DLSG----VAERRRSDARN----------AITAP--KFLAIPYNRVVEEGDSVRFQCAISGHPTP 6968
            ..:|    |||.....|:.          ::..|  :.|::..|..:.      ..|.:||.|.|
  Rat  2936 TDTGRYVCVAENTAGSAKKYFNLNVHVPPSVIGPNHEHLSVVVNHFIS------LTCEVSGFPPP 2994

  Fly  6969 WATWDKDGLIVTPTPRIAVKEIDDLRIIEIDEVTFDDAGLYRVTLENDFG----RIEATARLDVI 7029
            ...|.|:...:.|...:.:  :...|.::|......|.|.|.....|..|    ::..|..:...
  Rat  2995 DLNWLKNEQPIKPNTNVLI--VPGGRTLQIIRAKVSDGGEYTCVAINQAGESKKKVSLTVHVPPS 3057

  Fly  7030 RSSRYSKSPSVRSVRASSS-----------------------------------------RR--- 7050
            .....|:|.|:.:||..:|                                         ||   
  Rat  3058 IKDHGSESLSIVNVREGTSVSLECESNAVPPPVITWSKNGRMIPDSSNVAILTGGQMLHIRRAEV 3122

  Fly  7051 -----------------------NAHLYRRIMGPSTAI-----GGRMALASGYRGSSVPSVRFYH 7087
                                   |.::...|.||.|.:     ...:.|.....|...|::.:..
  Rat  3123 ADTGQYVCRAINVAGRDDKNFHLNVYVPPTIEGPETEVIVETMSNPVTLTCDATGIPPPTITWLK 3187

  Fly  7088 NDVELEASE--RVHILLQDSMALLIVDNVTREDEGQYTCIISG---------------------- 7128
            |...:|.|:  ..|||...|.  |.:..:.|.:.|.|||:.|.                      
  Rat  3188 NHKPIENSDPLEAHILSGGSK--LQIARLQRSNRGNYTCVASNMEGKAQKNYILSIQVPPSVAGA 3250

  Fly  7129 --------------------------------DHDPLITSTT----VTFHDSNTEIRRR------ 7151
                                            |..|:::..|    ||...|...|.|.      
  Rat  3251 EVPSEVSVLLGENVELVCDADGIPIPRLQWLRDGKPIVSGETERVRVTTDGSTLNIYRALTSDMG 3315

  Fly  7152 --RAVIT------ERL--------PEITKSLEG-----EVIDLCCSIEC----DEPYSYVWLRNG 7191
              ..|.|      :|:        |:|..:.|.     .::|...:|||    ..|....||:||
  Rat  3316 KYTCVATNPAGEEDRIFNLNVYVPPKIRGNKEEAEKLMALVDTSLNIECKATGTPPPQISWLKNG 3380

  Fly  7192 EILPDSDEFNYIDHGNG-RL------------CLRINDAFDIDSGIYSCQVF----------TSD 7233
            ..||.|.....:..|.. |:            |:..|.| .|||..||.|||          |.:
  Rat  3381 LPLPISSHIRLLSAGQAIRIVRAQVSDVAVYTCVASNRA-GIDSKRYSLQVFVPPNMDNAMGTEE 3444

  Fly  7234 I----NDSTSDSTF--------------------DSH-------SICSLINSGCSD-----CSSS 7262
            |    ..|||.:.|                    |:|       .:..||.:...|     |.:|
  Rat  3445 ITLVKGSSTSMTCFTDGAPTPSMSWLRDGQPLALDAHLTIGTQGMVLQLIKADTEDTGKYTCVAS 3509

  Fly  7263 GE---------LCVLE----RDLRGQDEECVQLLKTPLPVVC-ASGDEA-----LFYARVFPCDA 7308
            .|         |.|||    ....|..|..| ::..||.:.| |||..|     :...|.|....
  Rat  3510 NEAGEVSKHFVLKVLEPPHINGSEGPGEVSV-IVNNPLELSCIASGIPAPKISWMKDGRPFLQTE 3573

  Fly  7309 EADWYLNGQLL----AQADDSLNMT-LESYP---ENGIRLLRM------------RDVTASRSGE 7353
            :......|.:|    ||.:|:...| |.|.|   ::...|:|:            :|.|..|:.:
  Rat  3574 QVQTLEGGAILRVSSAQVEDTGRYTCLASSPAGDDDKEYLVRVHVPPNIAGVDEAQDFTVLRNRQ 3638

  Fly  7354 ICLQVKHPQAEFRRIPTTRTYTSLLVLPAIR----------GNSSSSSLAARSCILTR------- 7401
            :.|:.|........|...:....|...|.:|          .|:.....|..:|:.:.       
  Rat  3639 VTLECKSDAVPPPVIMWLKNGEQLQATPRVRILSGGRYLQINNADLGDTANYTCVASNIAGKTTR 3703

  Fly  7402 ---------------PEDCTALIGGHVRLSVRYEPFPGTKVIWYKACHPIVES-SNVTIRTTSQQ 7450
                           |:....|:...:.|....|..|..::.|.|....:.|| :..:|   .:.
  Rat  3704 EFILTVNVPPSISGGPQSLVTLLNKSIALECLAEGVPSPRITWRKDGVVLAESHARYSI---LEN 3765

  Fly  7451 STLYITDISADDSGKYTVEVMNDYGVEAAAASVAVEGPPEPPSGQPSVSLGPDRVAVAWCGPPYD 7515
            ..|:|......|:|:|.....|..|.:.....:.|..|       ||::.||..|.|. ......
  Rat  3766 GFLHIQSAHITDTGRYLCMATNVAGTDRRRIDLQVHVP-------PSIAAGPTNVTVT-VNVQTT 3822

  Fly  7516 GGCMITGF---IIEMQTIG-----DENCDEDSWQQVTRVVDSLAYTVKNLQPERQYRFRVRAENI 7572
            ..|..||.   .|..:..|     |:|  ::|::.::.  .||.....::.....|...|.::  
  Rat  3823 LACEATGIPKPSINWRKDGHLLNVDQN--QNSYRLLSS--GSLIIISPSVDDTASYECTVTSD-- 3881

  Fly  7573 HGRSAPGQASELVQITNTPQRSTSSDASD----RFGQATVSVQSGGD-------FKSRFEIIEEL 7626
                 .|:....|.:|.....:.:.:..|    |...|.::..:.|.       .|:...::.. 
  Rat  3882 -----AGEDKRTVDLTVQVPPTIADEPMDFLVTRQAPAVMTCSASGVPLPSIHWTKNGIRLLPR- 3940

  Fly  7627 GKGRFGIVYKVQERGQPE----QLLAAKVIKCIKSQDRQKVLEEISIMRALQHPKLLQLAASFES 7687
            |.|     |::...|..|    ||..|....||.......|...:::  .:|.|..:|     ..
  Rat  3941 GDG-----YRILSSGAIEISAAQLNHAGRYTCIARNAAGSVHRHVTL--RVQEPPFIQ-----PQ 3993

  Fly  7688 PREIVMVM-------------------------EYITGG-----------ELFERVVADDFTL-- 7714
            |.|:.:::                         ..||.|           ::...|..|..|.  
  Rat  3994 PSELDVILNNPILLPCEATGIPTPFITWQKEGINVITSGKSLAVLPSGSLQISRAVQGDAGTYMC 4058

  Fly  7715 -------TEMDCILFLRQVCDGVAYMHGQSVVHLDLKPENIMCHTRTSHQIKI--------IDFG 7764
                   |.:..|....||...::....:.||.:| ||.:::|.|..|....|        :...
  Rat  4059 VAQNPAGTALGKIKLNVQVPPAISSHQKEYVVTMD-KPVSLLCETEGSPPPDITWHKDGHALTES 4122

  Fly  7765 LAQRLDTKAPVRVLFGTPE------------------------FIPPEIISYEPIGFQSDMWSVG 7805
            :.||:.....:::.|..|:                        .:||.|.|.|.....::...|.
  Rat  4123 IRQRILNSGALQIAFAQPDDAGQYTCMAANMAGSSSMSTTLTVHVPPRIQSTEVHYTVNENSQVV 4187

  Fly  7806 VICY---------------VLLSGLSPFMGDTDVETFSNITRADYDYDDE-AFDCVSQEAKDFIS 7854
            :.|.               |||:.|   :|....:.:..:...:...:|. .:.||:..|..   
  Rat  4188 LPCVADGIPTPAIHWERDSVLLANL---LGKYTAQPYGELVLENVVLEDAGTYTCVANNAAG--- 4246

  Fly  7855 QLLVHRKEDRLTAQQCL-ASKWLSQRPDDSLSNNKICTDKLKKFIIRRKWQKTGNAIRALGRMAN 7918
                   ||..|....: |....::.|.| ||.||                  |..:|...:...
  Rat  4247 -------EDTHTVTLTVHALPTFTELPGD-LSLNK------------------GEQLRLSCKAVG 4285

  Fly  7919 LSVSRRNSAIAMGVLSSPRPSISGLGMLTTSAIGSGTSSQMTSLHE---------------EEDD 7968
            :.:.:........::.:...|::|...|....:....|.......|               |...
  Rat  4286 IPLPKLTWTFNNNIIPAHFDSVNGHSELVIEKVSKEDSGTYVCTAENSVGFVKAIGFVYVKEPPV 4350

  Fly  7969 FSGEMP-----PVEKRTVLKLRDKS---------------QCSER----------------SDSG 7997
            |.|:.|     |:....:|....|.               :.|.|                .|:|
  Rat  4351 FKGDYPSNWIEPLGGNAILNCEVKGDPAPTIQWSRKGADVEISHRIRQLGNGSLAIYGTVNEDAG 4415

  Fly  7998 YSEC--SNCSGAQE-TLLLSLAKSKLEAIAKASTLPTVVHDTEQPVSLELPTKGE---AIMRS-- 8054
            ...|  :|.:|..| ::.|:|..|.:..:....|    :.|....|:|:....||   .|..|  
  Rat  4416 DYTCVAANEAGVVERSMSLTLQSSPMITLEPVET----IVDAGGRVTLDCQAAGEPQPTITWSRQ 4476

  Fly  8055 ----DFTNTIKM-RKKSLEDSAAREKPRSKPQ--VKPLLCESKLKVS---QLKDRFQVSPAPASA 8109
                .:.|.:.| ...||..:|||::..|:.:  .:.|:....::|.   |:...|.:..|..|.
  Rat  4477 GRPIPWDNRLTMLPNSSLYIAAARKEDTSEYECVARNLMGSVLVRVPVIVQVHGGFSLWSAWRSC 4541

  Fly  8110 SAS--------ASAANKPPLAYGPFKIAKVASVGRISRT---------------EEPGRSGRGAP 8151
            |.:        :...|.||.|.|........|..|..:.               ||..||     
  Rat  4542 SVTCGKGIQKRSRLCNNPPPANGGRPCQGSESEARQCQNKLCPVDGHWSEWSFWEECSRS----- 4601

  Fly  8152 SVSGKGKSPQVRSMPSSPLPQRSATPTRLMSQRVREAAERLAQQHTV-------ASAQRHLGNGR 8209
              .|.|...:.|:. |:|..|....|....:........|....|.|       .|..:..|.|.
  Rat  4602 --CGHGNQTRTRTC-SNPPAQHGGRPCEGYAVETIMCNIRPCPVHGVWNAWQPWGSCSKSCGKGS 4663

  Fly  8210 GTGTGNGNGNSNSNGNGNGNTAETNRE 8236
            .|.|...|....|.|....|.|||..:
  Rat  4664 QTRTRLCNSPPPSFGGAYCNGAETQMQ 4690

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Strn-MlckNP_001261019.1 IG_like 51..127 CDD:214653
Ig <69..>112 CDD:299845
I-set 137..226 CDD:254352
I-set 235..314 CDD:254352
Ig_2 244..314 CDD:290606
I-set 438..513 CDD:254352
Ig 454..510 CDD:143165
I-set 537..626 CDD:254352
Ig 555..618 CDD:299845
I-set 636..713 CDD:254352
Ig 652..712 CDD:143165
SMC_N <2190..2854 CDD:280601
I-set 5300..5388 CDD:254352 24/109 (22%)
IGc2 5313..5378 CDD:197706 17/76 (22%)
IG 5412..5482 CDD:214652 23/71 (32%)
IGc2 5413..5481 CDD:197706 22/67 (33%)
I-set 5542..5627 CDD:254352 25/91 (27%)
Ig 5556..5621 CDD:143165 24/65 (37%)
Ig 5654..5721 CDD:143165 19/75 (25%)
I-set 5784..5874 CDD:254352 29/103 (28%)
IGc2 5797..5864 CDD:197706 23/67 (34%)
I-set 5887..5970 CDD:254352 30/90 (33%)
Ig 5902..5966 CDD:143165 27/69 (39%)
I-set 5997..6086 CDD:254352 24/89 (27%)
Ig 6026..6083 CDD:143165 19/57 (33%)
I-set 6097..6187 CDD:254352 26/110 (24%)
Ig 6114..6187 CDD:299845 24/93 (26%)
FN3 6216..6310 CDD:238020 26/127 (20%)
I-set 6321..6412 CDD:254352 36/157 (23%)
Ig 6328..6412 CDD:299845 33/147 (22%)
I-set 6442..6531 CDD:254352 32/100 (32%)
Ig 6459..6528 CDD:143165 28/68 (41%)
I-set 6541..6632 CDD:254352 27/96 (28%)
IGc2 6555..6622 CDD:197706 22/66 (33%)
I-set 6662..6754 CDD:254352 20/91 (22%)
Ig 6679..6751 CDD:143165 19/71 (27%)
I-set 6779..6868 CDD:254352 35/100 (35%)
IGc2 6793..6858 CDD:197706 28/64 (44%)
Ig 6938..7022 CDD:299845 18/89 (20%)
I-set 6939..7028 CDD:254352 19/94 (20%)
IG 7075..7140 CDD:214652 19/124 (15%)
Ig 7075..7140 CDD:143165 19/124 (15%)
IG 7167..7239 CDD:214652 29/107 (27%)
Ig 7173..7239 CDD:143165 27/96 (28%)
Ig 7392..7475 CDD:299845 18/105 (17%)
IG 7406..7475 CDD:214652 15/69 (22%)
FN3 7489..7588 CDD:238020 20/106 (19%)
S_TKc 7620..7876 CDD:214567 59/353 (17%)
STKc_MLCK 7626..7876 CDD:271005 59/347 (17%)
Hmcn1NP_001258221.1 VWA_2 42..212 CDD:290253
I-set 520..608 CDD:254352
ig 524..606 CDD:278476
I-set 612..696 CDD:254352
Ig 626..696 CDD:299845
I-set 702..789 CDD:254352
Ig 716..789 CDD:299845
Ig 792..884 CDD:299845 4/11 (36%)
IG_like 799..884 CDD:214653 4/11 (36%)
I-set 890..977 CDD:254352 15/86 (17%)
IGc2 903..967 CDD:197706 8/63 (13%)
Ig 980..1071 CDD:299845 22/120 (18%)
IG 994..1068 CDD:214652 19/101 (19%)
I-set 1085..1167 CDD:254352 20/84 (24%)
Ig 1086..1167 CDD:299845 20/83 (24%)
I-set 1171..1258 CDD:254352 26/98 (27%)
Ig 1188..1255 CDD:143165 22/70 (31%)
Ig 1261..1357 CDD:299845 15/95 (16%)
I-set 1267..1355 CDD:254352 13/87 (15%)
I-set 1368..1448 CDD:254352 24/81 (30%)
Ig 1380..1448 CDD:299845 23/69 (33%)
IG 1460..1541 CDD:214652 24/102 (24%)
IGc2 1470..1532 CDD:197706 19/76 (25%)
IG_like 1557..1633 CDD:214653 13/81 (16%)
Ig 1565..1632 CDD:143165 12/72 (17%)
I-set 1645..1729 CDD:254352 29/94 (31%)
Ig 1648..1725 CDD:299845 27/87 (31%)
I-set 1752..1822 CDD:254352 28/93 (30%)
Ig 1754..1815 CDD:299845 26/69 (38%)
IG 1834..1915 CDD:214652 23/84 (27%)
IGc2 1843..1905 CDD:197706 19/63 (30%)
IG_like 1929..2008 CDD:214653 23/84 (27%)
IGc2 1935..1998 CDD:197706 20/68 (29%)
I-set 2012..2100 CDD:254352 15/87 (17%)
Ig 2021..2092 CDD:299845 13/70 (19%)
I-set 2111..2191 CDD:254352 17/94 (18%)
IGc2 2119..2181 CDD:197706 14/76 (18%)
I-set 2203..2286 CDD:254352 7/82 (9%)
IGc2 2210..2276 CDD:197706 4/65 (6%)
Ig 2299..2380 CDD:299845 29/83 (35%)
IG_like 2300..2380 CDD:214653 29/82 (35%)
I-set 2392..2474 CDD:254352 11/83 (13%)
IGc2 2400..2464 CDD:197706 9/65 (14%)
I-set 2478..2567 CDD:254352 31/90 (34%)
IGc2 2493..2557 CDD:197706 26/65 (40%)
I-set 2582..2663 CDD:254352 27/92 (29%)
IGc2 2594..2653 CDD:197706 21/61 (34%)
I-set 2681..2762 CDD:254352 20/106 (19%)
Ig 2688..2762 CDD:299845 19/99 (19%)
IG_like 2789..2865 CDD:214653 30/77 (39%)
IGc2 2791..2855 CDD:197706 28/65 (43%)
I-set 2879..2960 CDD:254352 16/85 (19%)
Ig 2879..2950 CDD:299845 15/75 (20%)
IG 2972..3052 CDD:214652 17/87 (20%)
IGc2 2982..3042 CDD:197706 14/67 (21%)
IG 3069..3147 CDD:214652 5/77 (6%)
IGc2 3073..3137 CDD:197706 3/63 (5%)
IG 3150..3241 CDD:214652 21/92 (23%)
Ig 3150..3241 CDD:299845 21/92 (23%)
Ig 3244..3338 CDD:299845 11/93 (12%)
I-set 3252..3336 CDD:254352 11/83 (13%)
I-set 3354..3430 CDD:254352 22/76 (29%)
IGc2 3357..3420 CDD:197706 17/63 (27%)
Ig 3433..3523 CDD:299845 15/89 (17%)
IG_like 3443..3523 CDD:214653 14/79 (18%)
IG_like 3535..3616 CDD:214653 21/81 (26%)
IGc2 3543..3606 CDD:197706 18/62 (29%)
I-set 3629..3709 CDD:254352 12/79 (15%)
IGc2 3636..3699 CDD:197706 9/62 (15%)
I-set 3713..3800 CDD:254352 17/89 (19%)
Ig 3719..3795 CDD:299845 17/78 (22%)
Ig 3823..3889 CDD:143165 13/76 (17%)
I-set 3897..3984 CDD:254352 16/94 (17%)
IGc2 3913..3974 CDD:197706 13/66 (20%)
Ig 3993..4066 CDD:299845 8/72 (11%)
IG_like 3994..4075 CDD:214653 10/80 (13%)
IG_like 4085..4165 CDD:214653 13/80 (16%)
IGc2 4092..4155 CDD:197706 11/63 (17%)
Ig 4168..4258 CDD:299845 19/102 (19%)
IG 4177..4256 CDD:214652 14/91 (15%)
I-set 4260..4345 CDD:254352 13/103 (13%)
IGc2 4274..4335 CDD:197706 7/60 (12%)
IG_like 4356..4435 CDD:214653 12/78 (15%)
IGc2 4364..4426 CDD:197706 8/61 (13%)
I-set 4440..4526 CDD:254352 18/89 (20%)
Ig 4440..4521 CDD:299845 17/84 (20%)
TSP1 4533..4584 CDD:214559 10/50 (20%)
TSP1 4589..4641 CDD:214559 12/59 (20%)
TSP1 4646..4698 CDD:214559 12/45 (27%)
TSP1 4703..4755 CDD:214559
TSP1 4760..4812 CDD:214559
TSP1 4817..4869 CDD:214559
G2F 4868..5092 CDD:214774
EGF_CA 5107..5146 CDD:214542
EGF_CA 5147..5190 CDD:284955
EGF_CA 5192..5229 CDD:214542
EGF_CA 5230..5263 CDD:238011
EGF_CA 5272..5313 CDD:284955
EGF_CA 5315..5354 CDD:214542
EGF_CA 5432..5471 CDD:214542
EGF_CA 5472..5508 CDD:214542
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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