DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Strn-Mlck and mlck-1

DIOPT Version :9

Sequence 1:NP_001261019.1 Gene:Strn-Mlck / 36753 FlyBaseID:FBgn0265045 Length:8255 Species:Drosophila melanogaster
Sequence 2:NP_509689.1 Gene:mlck-1 / 181217 WormBaseID:WBGene00013869 Length:1211 Species:Caenorhabditis elegans


Alignment Length:704 Identity:194/704 - (27%)
Similarity:327/704 - (46%) Gaps:154/704 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  7609 SVQSGGDFKSRFEIIEELGKGRFGIVYKVQERGQPEQLLAAKVIKCIKSQDRQKVLEEISIMRAL 7673
            ::::...|.:.:::.:.||.|:||.||.|.|:...:: .|||.||..|..||.:|..|:||:..|
 Worm    34 NIRANVKFDTLYQVTKLLGDGKFGKVYCVIEKETGKE-FAAKFIKIRKEADRAEVEREVSILTQL 97

  Fly  7674 QHPKLLQL-AASFESPREIVMVMEYITGGELFERVVADDFTLTEMDCILFLRQVCDGVAYMHGQS 7737
            :||::.|: .|.:.:..::|::||.:.|||||:||..:.:.|:|:..::.:.|:|:.:.|:|.|:
 Worm    98 RHPRIAQIYDAFYTTTNDVVLIMEIVRGGELFDRVAEESYVLSELAVVMIICQLCEAIDYIHKQN 162

  Fly  7738 VVHLDLKPENIMCHTRTSHQIKIIDFGLAQRLDTKAPVRVLFGTPEFIPPEIISYEPIGFQSDMW 7802
            ::|||:|||||||.:.|.::||:||||||:..|....::.:.|||||..||:|.:|.:.:.:|||
 Worm   163 ILHLDVKPENIMCVSLTGNRIKLIDFGLARHYDGTQELKYMAGTPEFAAPEVIKFEKLDYHTDMW 227

  Fly  7803 SVGVICYVLLSGLSPFMGDTDVETFSNITRADYDYDDEAFDCVSQEAKDFISQLLVHRKEDRLTA 7867
            |:|||.|:||||.|||:||...||:.|:.:..:::.:| ||.|::|||||:::|||:.:..|:..
 Worm   228 SIGVITYILLSGYSPFLGDNLGETYCNVEKGVWEFTEE-FDTVTEEAKDFVTKLLVYDQSKRMLP 291

  Fly  7868 QQCLASKWLSQRPDDSLSN-------------NKICTDKLKKFIIRRKWQKTGNAIRALGRMANL 7919
            .:||...|:::....:..|             ||    ::.::..|||:::....::.|..|..|
 Worm   292 HECLQHPWIAKHRQKAACNTILEKPLNAPTLDNK----QIMRYNARRKFRRMIIYVKFLIEMNRL 352

  Fly  7920 --SVSRRNSA---------------------IAMGVLSSPRPSISGLGMLTTSAIGS-------- 7953
              |:..|.||                     .|:|....|   .||||.|...|:.|        
 Worm   353 RNSLKTRMSANGHKFFDPLLKMAEKKEQKISNAIGTAGCP---ASGLGSLVKMAVDSQKKNGDVP 414

  Fly  7954 ---------------------------GTSSQMTSLHE-----EEDDFSGEMPPVEKRTVLKLRD 7986
                                       .|.::.||..:     |.|..:|..||.|..|      
 Worm   415 VTQDANMSTEPEKEEKKKKKKIANADGSTKTEKTSSVKKKKLVETDGDAGLRPPPELMT------ 473

  Fly  7987 KSQCSERSDSGYSECSNCSGAQETLLLSLAKSK-LEAI-----AKASTLPTVVHDTEQPVSLELP 8045
                 :|:.:|          .|:||.::...| ||.:     .|..:|.:|..:.|.|...:  
 Worm   474 -----KRASTG----------GESLLAAVKVLKNLEVVENGNSPKRKSLCSVKEEKEIPAKKQ-- 521

  Fly  8046 TKGEAIMRSDFTNTIKMRKKSLEDSAAREKPRSKPQVKPLLCES------KLKVSQLKDRFQVSP 8104
            |:|...:.:.....|:.:...::......:..||  |.|.|.|:      :.|.:..|:...|.|
 Worm   522 TEGYKTLETTENGDIRRKSAPVKQDTLTCQDNSK--VTPQLLETAPNGEIRRKSASAKEEKSVKP 584

  Fly  8105 APA---SASASASAANKPPLAYGPFKIAKVASVGRISRTEEPGRSGRGAPSVSGKGKSPQVRS-- 8164
            ...   .:|||........|:..|.|:.|:||:..           :|...|..|.|:..|.:  
 Worm   585 EEVIRKKSSASVKETKTVELSVVPVKLEKLASIDE-----------KGEKLVKKKKKTTTVTAEI 638

  Fly  8165 -MPSSPLPQRS----ATPTRLMSQRVREAAERLAQQHTVASAQRHLGNGRGTGT 8213
             .|.|.:..:.    ..|..|....|.:|.|:          :|.||:.|.:.|
 Worm   639 EKPKSVIESKEEKLVEKPKLLNGTLVSDALEK----------RRSLGSKRASET 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Strn-MlckNP_001261019.1 IG_like 51..127 CDD:214653
Ig <69..>112 CDD:299845
I-set 137..226 CDD:254352
I-set 235..314 CDD:254352
Ig_2 244..314 CDD:290606
I-set 438..513 CDD:254352
Ig 454..510 CDD:143165
I-set 537..626 CDD:254352
Ig 555..618 CDD:299845
I-set 636..713 CDD:254352
Ig 652..712 CDD:143165
SMC_N <2190..2854 CDD:280601
I-set 5300..5388 CDD:254352
IGc2 5313..5378 CDD:197706
IG 5412..5482 CDD:214652
IGc2 5413..5481 CDD:197706
I-set 5542..5627 CDD:254352
Ig 5556..5621 CDD:143165
Ig 5654..5721 CDD:143165
I-set 5784..5874 CDD:254352
IGc2 5797..5864 CDD:197706
I-set 5887..5970 CDD:254352
Ig 5902..5966 CDD:143165
I-set 5997..6086 CDD:254352
Ig 6026..6083 CDD:143165
I-set 6097..6187 CDD:254352
Ig 6114..6187 CDD:299845
FN3 6216..6310 CDD:238020
I-set 6321..6412 CDD:254352
Ig 6328..6412 CDD:299845
I-set 6442..6531 CDD:254352
Ig 6459..6528 CDD:143165
I-set 6541..6632 CDD:254352
IGc2 6555..6622 CDD:197706
I-set 6662..6754 CDD:254352
Ig 6679..6751 CDD:143165
I-set 6779..6868 CDD:254352
IGc2 6793..6858 CDD:197706
Ig 6938..7022 CDD:299845
I-set 6939..7028 CDD:254352
IG 7075..7140 CDD:214652
Ig 7075..7140 CDD:143165
IG 7167..7239 CDD:214652
Ig 7173..7239 CDD:143165
Ig 7392..7475 CDD:299845
IG 7406..7475 CDD:214652
FN3 7489..7588 CDD:238020
S_TKc 7620..7876 CDD:214567 107/256 (42%)
STKc_MLCK 7626..7876 CDD:271005 107/250 (43%)
mlck-1NP_509689.1 PKc_like 51..300 CDD:389743 107/250 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_104679
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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