DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Strn-Mlck and mylk5

DIOPT Version :9

Sequence 1:NP_001261019.1 Gene:Strn-Mlck / 36753 FlyBaseID:FBgn0265045 Length:8255 Species:Drosophila melanogaster
Sequence 2:XP_005164113.1 Gene:mylk5 / 100003770 ZFINID:ZDB-GENE-050309-74 Length:856 Species:Danio rerio


Alignment Length:867 Identity:268/867 - (30%)
Similarity:410/867 - (47%) Gaps:161/867 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  7160 PEITKSLEGEVID------LCCSIECDEPYSYVWLRNGEILPDSDEFNYIDHGNGRLCLRINDAF 7218
            |..||.||..::|      |..||...:|.|..||.|||.:    .|........::.|.:.:..
Zfish    55 PLFTKPLEDCIVDEGNDITLNGSITGSQPISISWLHNGETV----RFGKSSLVGEKVTLVVRECL 115

  Fly  7219 DIDSGIYSCQVFTSDINDSTSDSTFDSHSICSLINSGCSDCSSSGELCVLERDLRGQDEECVQLL 7283
            ..|:|.|:|..      ::.:..|                 |||..:||       :|.|.:   
Zfish   116 PEDAGAYTCMA------ENIAGKT-----------------SSSAAVCV-------RDYESI--- 147

  Fly  7284 KTPLPVVCASGDEALFYARVFPCDAEADWYLNGQLLAQA------DDSLNMTLESYPENGIRLLR 7342
                             .||           |..::.::      .|.||.|             
Zfish   148 -----------------VRV-----------NNNIINKSHAHPHTPDLLNGT------------- 171

  Fly  7343 MRDVTASRSGEICLQVKHPQAEFRRIPTTRTYTSLLVLPAIRGNSSSSSLAARSCILTRPED-CT 7406
                  |....:|   |.|::.....|.|.:......:...|.:||.:...|.......|.| ..
Zfish   172 ------SEDTSVC---KGPESPQTGSPVTNSPVLKREVHVKRRSSSGAGFTAPPLQFVDPLDRLE 227

  Fly  7407 ALIGGHVRLSVRYEPFPGTKVIWYKACHPIVESSNVTIRTTSQQSTLYITDISADDSGKYTVEVM 7471
            ..:|...||...::........|......:.|||...:.:..:.|:|.|::...:|||:||:.|.
Zfish   228 VQVGETARLECFFKGSSPVASCWVFNKKEVEESSRFHLESCDENSSLVISEALPEDSGRYTIFVR 292

  Fly  7472 NDYGVEAAAASVAVEGPPEPPSGQPSVS-LGPDRVAVAWCGPPYDGGCMITGFIIEMQTIGDENC 7535
            :.........::.|...|:||:..|... |.|..:.::|.||.||||..:||:::|:       |
Zfish   293 DRKSSAQHTVTLNVIDLPQPPASCPVARVLSPHSLVLSWSGPSYDGGSAVTGYVVEV-------C 350

  Fly  7536 DEDS--WQQVTRVVDSLAYTV-KNLQPERQYRFRVRAENIHGRSAPGQASELVQITNTPQRSTSS 7597
            :::|  |:::|....|.:..| ..|||:.||.||:||.|..|.|.|.|.|:.|.:.| |..|...
Zfish   351 EKESEQWKELTAQCKSTSLRVTSGLQPQGQYCFRIRACNTVGVSEPSQESQTVTMDN-PGDSREE 414

  Fly  7598 DASDRFGQATVSVQSGGDFKSRFEIIEELGKGRFGIVYKVQERGQPEQLLAAKVIKCIKSQDRQK 7662
            ...:   ...|::.:.......:.::|:||.|:||.|:::..:....: .|.|..|..:::||:.
Zfish   415 KPVE---YVNVTIDTQHKLTDHYNVLEKLGVGKFGQVFRMTHKVTGRE-CAGKFYKSRRAKDREA 475

  Fly  7663 VLEEISIMRALQHPKLLQLAASFESPREIVMVMEYITGGELFERVVADDFTLTEMDCILFLRQVC 7727
            ..:||.:|..|.||||:|..|::::..|:||||||:.|||||||:|.|.|..||:..:.::||:.
Zfish   476 ARKEIELMNFLHHPKLVQCLAAYDNKAEMVMVMEYVAGGELFERIVDDSFEHTEVSSVGYMRQIL 540

  Fly  7728 DGVAYMHGQSVVHLDLKPENIMCHTRTSHQIKIIDFGLAQRLDTKAPVRVLFGTPEFIPPEIISY 7792
            :|:.|||.|:::|||||||||:|..||..||||||||||.:||...|::|:.|||||:.||:|::
Zfish   541 EGIKYMHQQNILHLDLKPENIVCVDRTGSQIKIIDFGLACKLDPNTPLKVMQGTPEFVAPEVINF 605

  Fly  7793 EPIGFQSDMWSVGVICYVLLSGLSPFMGDTDVETFSNITRADYDYDDEAFDCVSQEAKDFISQLL 7857
            |.:...:||||||||||:||||.|||.|::|.||.:.:|.|.:::|:|:|:.::..||.|||.||
Zfish   606 EAVTLTTDMWSVGVICYILLSGESPFQGESDTETLALVTAAQWEFDEESFEEITDMAKGFISSLL 670

  Fly  7858 VHRKEDRLTAQQCLASKWLS-QRPDDSLSNNK-ICTDKLKKFIIRRKWQKTGNAIRALGRMANLS 7920
            ......||:.::.||..||. ...|:|.|..| :..||:|||:.|:||:|||.|:.||.|||   
Zfish   671 NKDPRRRLSCEEALAHDWLGFLCVDNSSSGGKNLSKDKMKKFLTRQKWKKTGKALLALKRMA--- 732

  Fly  7921 VSRRNSAIAMGVLSSPRPSISGLGMLTTSAIGSGTSSQMTSLHEEEDDFSGEMPPVEKRTVLKLR 7985
                       :||.|..|.|      ||.:           ||.|            :.:..|.
Zfish   733 -----------ILSKPEASAS------TSPV-----------HETE------------QALQSLE 757

  Fly  7986 DKSQCSERSDSGYSECSNCSGA 8007
            .|.||........|:.|...|:
Zfish   758 LKLQCKPEFSKTPSDLSVPQGS 779

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Strn-MlckNP_001261019.1 IG_like 51..127 CDD:214653
Ig <69..>112 CDD:299845
I-set 137..226 CDD:254352
I-set 235..314 CDD:254352
Ig_2 244..314 CDD:290606
I-set 438..513 CDD:254352
Ig 454..510 CDD:143165
I-set 537..626 CDD:254352
Ig 555..618 CDD:299845
I-set 636..713 CDD:254352
Ig 652..712 CDD:143165
SMC_N <2190..2854 CDD:280601
I-set 5300..5388 CDD:254352
IGc2 5313..5378 CDD:197706
IG 5412..5482 CDD:214652
IGc2 5413..5481 CDD:197706
I-set 5542..5627 CDD:254352
Ig 5556..5621 CDD:143165
Ig 5654..5721 CDD:143165
I-set 5784..5874 CDD:254352
IGc2 5797..5864 CDD:197706
I-set 5887..5970 CDD:254352
Ig 5902..5966 CDD:143165
I-set 5997..6086 CDD:254352
Ig 6026..6083 CDD:143165
I-set 6097..6187 CDD:254352
Ig 6114..6187 CDD:299845
FN3 6216..6310 CDD:238020
I-set 6321..6412 CDD:254352
Ig 6328..6412 CDD:299845
I-set 6442..6531 CDD:254352
Ig 6459..6528 CDD:143165
I-set 6541..6632 CDD:254352
IGc2 6555..6622 CDD:197706
I-set 6662..6754 CDD:254352
Ig 6679..6751 CDD:143165
I-set 6779..6868 CDD:254352
IGc2 6793..6858 CDD:197706
Ig 6938..7022 CDD:299845
I-set 6939..7028 CDD:254352
IG 7075..7140 CDD:214652
Ig 7075..7140 CDD:143165
IG 7167..7239 CDD:214652 18/77 (23%)
Ig 7173..7239 CDD:143165 16/65 (25%)
Ig 7392..7475 CDD:299845 19/83 (23%)
IG 7406..7475 CDD:214652 16/68 (24%)
FN3 7489..7588 CDD:238020 38/102 (37%)
S_TKc 7620..7876 CDD:214567 120/255 (47%)
STKc_MLCK 7626..7876 CDD:271005 119/249 (48%)
mylk5XP_005164113.1 I-set 55..141 CDD:254352 26/112 (23%)
Ig 72..137 CDD:143165 19/91 (21%)
Ig 217..314 CDD:299845 21/96 (22%)
I-set 218..306 CDD:254352 18/87 (21%)
FN3 310..404 CDD:238020 37/100 (37%)
S_TKc 434..689 CDD:214567 120/255 (47%)
STKc_MLCK 440..689 CDD:271005 119/249 (48%)
I-set 764..855 CDD:254352 3/16 (19%)
Ig 781..852 CDD:143165
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25795
orthoMCL 1 0.900 - - OOG6_104679
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4882
SonicParanoid 1 1.000 - - X3431
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

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