DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cyp4aa1 and Cyp26b1

DIOPT Version :10

Sequence 1:NP_611067.2 Gene:Cyp4aa1 / 36752 FlyBaseID:FBgn0034053 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_851601.2 Gene:Cyp26b1 / 312495 RGDID:631379 Length:512 Species:Rattus norvegicus


Alignment Length:535 Identity:112/535 - (20%)
Similarity:194/535 - (36%) Gaps:124/535 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LLVISLSIYTFYATLNTYLRSVLLSLRLT----------------------GPPSLPFLGNCMLV 63
            :|...|.:.:..|||...|.||.|.|.::                      |....|.:|.    
  Rat     1 MLFEGLELVSALATLAACLVSVTLLLAVSQQLWQLRWAATRDKSCKLPIPKGSMGFPLIGE---- 61

  Fly    64 TDKDLMRRCAGKAF-----DLYGSLVRIWVLLFPFFAVLEPEDLQVILSSKKHTNKVFFYRLMHN 123
            |...|::   |..|     :.||::.:..:|..|...|...|:::.||..:.......:.|....
  Rat    62 TGHWLLQ---GSGFQSSRREKYGNVFKTHLLGRPLIRVTGAENVRKILLGEHQLVSTEWPRSARV 123

  Fly   124 FLGDGLITSS-GSKWSNHRRLIQPAFHHNLLEKFIDTFVDASQSLYENLDAEAVGTE-INIAKYV 186
            .||...:.:| |....|.|::....|.|..||.::...   ...:.:.|.|.:...| ||:.:..
  Rat   124 LLGPNTVANSIGDIHRNKRKVFSKIFSHEALESYLPKI---QLVIQDTLRAWSSQPEAINVYQEA 185

  Fly   187 NNCVLDILNEAVLGVPIKKRGQDV---------------AMMEDSPF---RQGKIMMPARFTQPW 233
            ......:....:||..|.:  :|:               ::..|.||   |:|            
  Rat   186 QRLTFRMAVRVLLGFSIPE--EDLGNLFEVYQQFVENVFSLPVDLPFSGYRRG------------ 236

  Fly   234 LLLDGIYHWTKMANDELNQKKRLNDFTRKMIQRRRQIQNNNNGNSERKCLLDHMIEIS-ESNRDF 297
                            :..::.|.....|.|:.:.|.....:.:.    .||.:||.| |..::.
  Rat   237 ----------------IQARQILQKGLEKAIREKLQCTQGKDYSD----ALDILIESSKEHGKEM 281

  Fly   298 TEEDIVNEACTFMLAGQDSVGAAVAFTLFLLTQNPECQDRCVLEL--------------ATIFED 348
            |.:::.:.....:.|...:..:|....:..|.::|...::...||              .|:..|
  Rat   282 TMQELKDGTLELIFAAYATTASASTSLIMQLLKHPAVLEKLREELRAQGLLHGGGCPCEGTLRLD 346

  Fly   349 SNRAPTMTDLHEMRYMEMCIKEALRLYPSVPLIARKLGEEVRLAKHTLPAGSNVFICPYATHRLA 413
            .        |..:||::..|||.:||:..|....|.:.:...|....:|.|.:|......||..|
  Rat   347 M--------LSGLRYLDCVIKEVMRLFTPVSGGYRTVLQTFELDGFQIPKGWSVMYSIRDTHDTA 403

  Fly   414 HIYPDPEKFQPERFSPENSENRH-PYAFLPFSAGPRYCIGNRFAIMEIKTIVSRLLRSYQLLPVT 477
            .::.|...|.|:|||...||::. .:.:|||..|.|.|:|...|.:.:|.:...|..       |
  Rat   404 PVFKDVNVFDPDRFSQARSEDKDGRFHYLPFGGGVRTCLGKHLAKLFLKVLAVELAS-------T 461

  Fly   478 GKTTIAA-TF-RITL 490
            .:..:|. || ||||
  Rat   462 SRFELATRTFPRITL 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp4aa1NP_611067.2 CYP4 81..498 CDD:410721 94/448 (21%)
Cyp26b1NP_851601.2 CYP26B1 60..490 CDD:410730 100/476 (21%)

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