DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sli and RLP19

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_179112.1 Gene:RLP19 / 815997 AraportID:AT2G15080 Length:983 Species:Arabidopsis thaliana


Alignment Length:944 Identity:203/944 - (21%)
Similarity:333/944 - (35%) Gaps:265/944 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 NSFQDLVSLERLRL-------NNNRLKAIPENFVTSSASLLRLDISNN-----VITTVGRRVFKG 194
            ||...|..|.:||.       ||:.:..||.:..|.| :|..||:|.|     :.:::|     .
plant   100 NSNSSLFRLPQLRFLTTLDLSNNDFIGQIPSSLETLS-NLTTLDLSRNHFSGRIPSSIG-----N 158

  Fly   195 AQSLRSLQLDNNQITCLDEHAFKGLVELEILTLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACD 259
            ...|..:...:|..:.....:...|..|....|:.||.:....:..|.|..|..||||.|.|..:
plant   159 LSHLIFVDFSHNNFSGQIPSSLGYLSHLTSFNLSYNNFSGRVPSSIGNLSYLTTLRLSRNSFFGE 223

  Fly   260 CHLSWLSRFLRSATRLAPYTR---CQSPSQLKGQNVA-----DLHDQEFKCSGLTEHAPMECGAE 316
            ...|..|.|  ..|.|...|.   .:.||.|  .|::     |||...|     ....|...| .
plant   224 LPSSLGSLF--HLTDLILDTNHFVGKIPSSL--GNLSHLTSIDLHKNNF-----VGEIPFSLG-N 278

  Fly   317 NSCPHPCRCADGIVDCREKSLTSVPVTLPDDTTELRLEQNFITELPPKSFSSFRRLRRIDLSN-- 379
            .||                 |||..::          :.|.:.|:|    |||..|.::|:.|  
plant   279 LSC-----------------LTSFILS----------DNNIVGEIP----SSFGNLNQLDILNVK 312

  Fly   380 -NNISRIAHDALSGLKQLTTLVLYGNKIK-DLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLH 442
             |.:|.....||..|::|:||.|:.|::. .|||.: ..|.:|:|.....|..:.....:..::.
plant   313 SNKLSGSFPIALLNLRKLSTLSLFNNRLTGTLPSNM-SSLSNLKLFDATENHFTGPLPSSLFNIP 376

  Fly   443 SLSLLSLYDNNIQ-SLANGTFDAMKSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESP 506
            ||..::|.:|.:. ||..|...:..::..:.|..|.|              :.||..|.::..:.
plant   377 SLKTITLENNQLNGSLGFGNISSYSNLTVLRLGNNNF--------------RGPIHRSISKLVNL 427

  Fly   507 KRM-----------------HRRRIESLREEKFKCS-----WDEL-------RMKLSGECRMDSD 542
            |.:                 |.:.||.|.......:     ::.|       .:.|||.....::
plant   428 KELDLSNYNTQGLVDFTIFSHLKSIEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHVSTTN 492

  Fly   543 CPAMCHCEGTTVD---CTGRGLKEIPRDIPLHTTELLL--------------------------- 577
            ..::.:.....:.   .:|.|:.|.|:.  |.:.||:|                           
plant   493 KSSLSNSSLVLISQLYLSGCGITEFPKF--LRSQELMLTLDISNNKIKGQVPGWLWMLPVLNYVN 555

  Fly   578 --------------------------------NDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 610
                                            |:|..|.|.|  ....||:|..|:...|:..|.
plant   556 LSNNTFIGFERSTKLGLTSIQEPPAMRQLFCSNNNFTGNIPS--FICELPYLSTLDFSNNKFNGS 618

  Fly   611 EPNAFEG--ASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 672
            .|.....  :.::|.|.|..|::.. :...:|   ..|.:|::..||:...:|.|..|::||..|
plant   619 IPTCMGNIQSPYLQALNLRHNRLSGLLPENIF---ESLISLDVGHNQLVGKLPRSLSHISSLGLL 680

  Fly   673 NLASNPFNCNCHLAWFAEW-------LRKKSLNGGAARCGAPSKVRDVQIK------DLPHSEFK 724
            |:.||..:....| |.:..       ||..:..|...:... ||:|.:.|.      .||.:.|.
plant   681 NVESNKISDTFPL-WLSSLQELQVLVLRSNAFYGPIEKTQF-SKLRIIDISGNQFNGTLPANFFV 743

  Fly   725 ------CSSENSEGCLG----------DGYCPPSCTCTG--------------TVVRCSRNQLK- 758
                  ...||.:...|          |.:...|.....              ||:..|.|:.: 
plant   744 NWTAMFSLDENEDQSNGETMSNMYMSTDYFYFDSMVLMNKGVEMELERVLKVFTVIDFSGNKFEG 808

  Fly   759 EIPR--GIPAETSELYLESNEIEQIHYERIRHLRSLTRLDLSNNQITILSNYTFANLTKLSTLII 821
            |||:  |:..|...|.|.:|.:.......:.:|.:|..||:|.|:::.........||.|:.:..
plant   809 EIPKSIGLLKELHVLNLSNNALSGHIASSMGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNF 873

  Fly   822 SYNKLQCL----------------QRHALSGLNNLRVLSLHG---NRISMLPEGSFEDLKSLTHI 867
            |:|:|..|                ..|.|.|.:..::..:||   .:..|.||...::.:.::.|
plant   874 SHNQLVGLLPGGTQFQTQKCSSFEDNHGLYGPSLEKICDIHGKTPQQSDMAPEPEEDEEEVISWI 938

  Fly   868 A------LGSNPLYCDCGLKWFS---DWIKLDYV 892
            |      ||: .|....|...||   ||.|..:|
plant   939 AAVIGFILGT-ALGLTFGCILFSYKPDWFKNPFV 971

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470
leucine-rich repeat 83..104 CDD:275380
LRR_8 102..160 CDD:290566 8/24 (33%)
leucine-rich repeat 105..125 CDD:275380
LRR_RI <119..259 CDD:238064 34/128 (27%)
leucine-rich repeat 126..149 CDD:275380 3/6 (50%)
LRR_8 149..208 CDD:290566 17/70 (24%)
leucine-rich repeat 150..173 CDD:275380 9/29 (31%)
leucine-rich repeat 174..197 CDD:275380 6/27 (22%)
LRR_8 197..256 CDD:290566 15/58 (26%)
leucine-rich repeat 198..221 CDD:275380 3/22 (14%)
leucine-rich repeat 222..245 CDD:275380 6/22 (27%)
leucine-rich repeat 246..371 CDD:275380 34/132 (26%)
LRRCT 254..303 CDD:214507 16/56 (29%)
LRRNT 319..350 CDD:214470 4/30 (13%)
LRR_8 349..406 CDD:290566 19/59 (32%)
LRR_4 371..411 CDD:289563 14/43 (33%)
leucine-rich repeat 372..395 CDD:275380 8/25 (32%)
leucine-rich repeat 396..415 CDD:275380 8/19 (42%)
leucine-rich repeat 420..443 CDD:275380 3/22 (14%)
leucine-rich repeat 444..465 CDD:275380 6/21 (29%)
leucine-rich repeat 468..480 CDD:275378 3/11 (27%)
LRRCT 476..525 CDD:214507 10/65 (15%)
leucine-rich repeat 484..545 CDD:275380 12/89 (13%)
LRRNT 542..574 CDD:214470 5/34 (15%)
leucine-rich repeat 552..570 CDD:275380 4/20 (20%)
leucine-rich repeat 572..596 CDD:275380 9/82 (11%)
LRR_RI <574..>678 CDD:238064 32/165 (19%)
LRR_8 595..655 CDD:290566 14/62 (23%)
leucine-rich repeat 597..620 CDD:275380 5/24 (21%)
leucine-rich repeat 621..644 CDD:275380 5/23 (22%)
leucine-rich repeat 645..668 CDD:275380 7/22 (32%)
leucine-rich repeat 669..756 CDD:275380 25/129 (19%)
LRRCT 677..726 CDD:214507 13/67 (19%)
LRRNT 739..770 CDD:214470 10/47 (21%)
leucine-rich repeat 757..791 CDD:275380 9/36 (25%)
LRR_4 770..807 CDD:289563 9/36 (25%)
LRR_8 790..850 CDD:290566 17/78 (22%)
LRR_4 791..830 CDD:289563 12/54 (22%)
leucine-rich repeat 792..815 CDD:275380 6/22 (27%)
LRR_4 814..863 CDD:289563 14/67 (21%)
leucine-rich repeat 816..839 CDD:275380 8/38 (21%)
leucine-rich repeat 840..861 CDD:275380 5/23 (22%)
LRRCT 872..920 CDD:214507 8/24 (33%)
EGF 935..966 CDD:278437
EGF_CA 971..1007 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1055..1086 CDD:238011
EGF_CA 1088..1124 CDD:238011
Laminin_G_1 1204..1335 CDD:278483
CT 1435..1504 CDD:214482
RLP19NP_179112.1 PLN00113 3..>646 CDD:331614 127/611 (21%)
leucine-rich repeat 114..137 CDD:275380 6/23 (26%)
leucine-rich repeat 138..161 CDD:275380 6/27 (22%)
leucine-rich repeat 162..185 CDD:275380 3/22 (14%)
leucine-rich repeat 186..209 CDD:275380 6/22 (27%)
leucine-rich repeat 210..233 CDD:275380 10/24 (42%)
leucine-rich repeat 234..257 CDD:275380 7/24 (29%)
leucine-rich repeat 258..281 CDD:275380 6/28 (21%)
leucine-rich repeat 282..305 CDD:275380 10/36 (28%)
leucine-rich repeat 306..329 CDD:275380 7/22 (32%)
leucine-rich repeat 330..351 CDD:275380 8/21 (38%)
leucine-rich repeat 354..377 CDD:275380 3/22 (14%)
leucine-rich repeat 378..402 CDD:275380 6/23 (26%)
leucine-rich repeat 403..424 CDD:275380 6/34 (18%)
leucine-rich repeat 427..451 CDD:275380 2/23 (9%)
leucine-rich repeat 452..477 CDD:275380 4/24 (17%)
leucine-rich repeat 507..526 CDD:275380 5/20 (25%)
leucine-rich repeat 527..550 CDD:275380 1/22 (5%)
leucine-rich repeat 551..574 CDD:275380 0/22 (0%)
leucine-rich repeat 575..604 CDD:275380 6/30 (20%)
PLN00113 <604..692 CDD:331614 23/90 (26%)
leucine-rich repeat 605..630 CDD:275380 5/24 (21%)
leucine-rich repeat 631..655 CDD:275380 6/26 (23%)
PLN00113 <656..739 CDD:331614 22/84 (26%)
leucine-rich repeat 656..676 CDD:275380 6/19 (32%)
leucine-rich repeat 677..700 CDD:275380 7/23 (30%)
leucine-rich repeat 701..722 CDD:275380 3/21 (14%)
leucine-rich repeat 723..795 CDD:275380 10/71 (14%)
leucine-rich repeat 796..819 CDD:275380 8/22 (36%)
PLN00113 <808..962 CDD:331614 37/154 (24%)
leucine-rich repeat 820..843 CDD:275380 4/22 (18%)
leucine-rich repeat 844..867 CDD:275380 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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