DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sli and slit2

DIOPT Version :10

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:XP_021331525.1 Gene:slit2 / 80353 ZFINID:ZDB-GENE-010306-3 Length:1547 Species:Danio rerio


Alignment Length:1537 Identity:652/1537 - (42%)
Similarity:931/1537 - (60%) Gaps:121/1537 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 CPRVCSCTGLNVDCSHRGLTSVPRKISADVERLELQGNNLTVIYETDFQRLTKLRMLQLTDNQIH 137
            ||..|||:|..|||..:.|.||||.|..:||||:|..||||.|.:.||..|..||:|||.:|:|.
Zfish    21 CPSQCSCSGTAVDCHGQSLRSVPRNIPRNVERLDLNANNLTKITKADFAGLKNLRVLQLMENKIS 85

  Fly   138 TIERNSFQDLVSLERLRLNNNRLKAIPENFVTSSASLLRLDISNNVITTVGRRVFKGAQSLRSLQ 202
            :|||.:||||..|||||||.|.|:.:||.....:..|.|||:|.|.|..:.|:.|:|:..:::||
Zfish    86 SIERGAFQDLQELERLRLNRNNLQVLPELLFLGTTKLFRLDLSENQIQGIPRKAFRGSTEIKNLQ 150

  Fly   203 LDNNQITCLDEHAFKGLVELEILTLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSR 267
            ||.|||:|:::.||:.|.:||:|||||||::.|....|..:.:||..||..|...|||:::|||.
Zfish   151 LDYNQISCIEDGAFRALRDLEVLTLNNNNISRLSVASFNHMPKLRTFRLHSNNLLCDCNVAWLSD 215

  Fly   268 FLRSATRLAPYTRCQSPSQLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDC 332
            :||...||..||:|.:|..|:|.|:|::..:||.|:|...|:  .|.. ..||..|.|::.:|||
Zfish   216 WLRQRPRLGLYTQCMAPPSLRGHNIAEVQKKEFMCTGPQSHS--SCSV-LQCPELCTCSNNVVDC 277

  Fly   333 REKSLTSVPVTLPDDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLT 397
            |.|.||.:|..||:..||:|||||.|..:|..:|:.::||||||||||.|:.:|.|:..||:.|.
Zfish   278 RGKGLTEIPTNLPETITEIRLEQNSIKIIPAGAFAPYKRLRRIDLSNNQITELASDSFQGLRSLN 342

  Fly   398 TLVLYGNKIKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTF 462
            :||||||||.:||.|:|.||.||||||||||:|:|:|.|:|:||.:|:|||||||.:|::|.|||
Zfish   343 SLVLYGNKITELPKGLFDGLFSLQLLLLNANKINCLRVDSFQDLQNLNLLSLYDNKLQTIAKGTF 407

  Fly   463 DAMKSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS-- 525
            .::::|:|:|||:|||:|||:|:||||||..||||||||||.||:|:..:||..::.:||:||  
Zfish   408 SSLRAIQTLHLAQNPFMCDCHLKWLADYLQDNPIETSGARCTSPRRLANKRIGQIKSKKFRCSAK 472

  Fly   526 --------------WDELRMKLSGECRMDSDCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELL 576
                          .::.|.||.|:|..|..||..|.||||||||:|:.|.:||..||.:|.||.
Zfish   473 EQYFIPGIHHINKCVEDYRSKLGGDCFADLACPEKCRCEGTTVDCSGQKLTKIPDHIPQYTAELR 537

  Fly   577 LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE------------------ 623
            ||:||...:.:.|:|.:||.|.|:.|..|::|.||...|||||.:.|                  
Zfish   538 LNNNEFTVLEATGIFKKLPQLRKINLSNNKITDIEEGTFEGASGVNELILTSNRLEGVHYSMLKG 602

  Fly   624 ------LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 682
                  |.|..|:|..::|..|.||..::.|:||||.|:.:.||:|:.|:||::|||.:||||||
Zfish   603 LGGLRTLMLRSNRISCVNNGSFTGLSSVRLLSLYDNLITSMSPGAFDTLHSLSTLNLLANPFNCN 667

  Fly   683 CHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENSE-GCLGDGYCPPSCTCT 746
            |||||..||||||.:..|..||.:|..::::.|:|:...:|.|...|.| .|.....||..|:|.
Zfish   668 CHLAWLGEWLRKKRIVTGNPRCQSPYFLKEIPIQDVAVQDFACEEGNDENSCSPLARCPAECSCL 732

  Fly   747 GTVVRCSRNQLKEIPRGIPAETSELYLESNEIEQIHYERIRHLRSLTRLDLSNNQITILSNYTFA 811
            .||||||...||.:|:|||.:.:||||:.||..|:..| :.:.:.||.:|||||||:.|||::|:
Zfish   733 DTVVRCSNKGLKVLPKGIPRDVTELYLDGNEFTQVPLE-LSNYKHLTLIDLSNNQISTLSNHSFS 796

  Fly   812 NLTKLSTLIISYNKLQCLQRHALSGLNNLRVLSLHGNRISMLPEGSFEDLKSLTHIALGSNPLYC 876
            |:::|.|||:|||:|:|:...|..||.:||:||||||.|:::|:|:|:||.||:|:|||:|||||
Zfish   797 NMSELLTLILSYNRLRCIPAKAFDGLKSLRLLSLHGNDIAVIPDGAFKDLSSLSHLALGANPLYC 861

  Fly   877 DCGLKWFSDWIKLDYVEPGIARCAEPEQMKDKLILSTPSSSFVCR-----------GRVRNDILA 930
            ||.::|.|||:|..|.|||||||..|..|.|||:|:|||..|.|.           |.|...|||
Zfish   862 DCHMQWLSDWVKSGYKEPGIARCTGPGDMTDKLLLTTPSKKFTCTEVPGTCGFPVPGPVDVSILA 926

  Fly   931 KCNACFEQPCQNQAQCVALPQREYQCLCQPGYHGKHCEFMIDACYGNPCRNNATCTVL--EEGRF 993
            |||.|...||:|...|...|...|:|.|..|:.|:.||..|.||..|||:|..||.:.  ||...
Zfish   927 KCNPCLSNPCKNDGTCSNHPVDFYRCTCPYGFKGQDCEEPIHACISNPCQNGGTCHLKDGEENTH 991

  Fly   994 SCQCAPGYTGARCETNIDDCLGEIKCQNNATCIDGVESYKCECQPGFS---------GEFCDTKI 1049
            .|.|..|:.|..||.||||| .:..|:||:||:||:.:|.|.|.|.::         ||.|:.|:
Zfish   992 WCVCPEGFEGDECEINIDDC-EDNDCENNSTCVDGINNYTCLCSPEYTAANNNEVEKGELCEDKL 1055

  Fly  1050 QFCSPEFNPCANGAKCMDHFTHYSCDCQAGFHGTNCTDNIDDCQNHMCQNGGTCVDGINDYQCRC 1114
            .||:.|.|.|.:.:||:.....:.|:|..|:.|.:|..:.|||:::.|:||..|:|.:|.|.|.|
Zfish  1056 DFCASELNLCQHDSKCILTAKGFMCECTPGYTGEHCEVDFDDCEDNKCKNGAQCIDAVNGYTCVC 1120

  Fly  1115 PDDYTGKYCEGHNMISMMYPQTSPCQNHECKHGVCFQPNAQGSDYLCRCHPGYTGKWCEYLTSIS 1179
            |:.|:|.:||...  .|:.|:||||.:::|.:|.  |...:.:|.:|:|.|||.|..||.|.|::
Zfish  1121 PEGYSGLFCEFSP--PMVLPRTSPCDHYDCANGA--QCVVKDTDPVCQCLPGYEGVHCERLVSVN 1181

  Fly  1180 FVHNNSFVELEPLRTRPEANVTIVFSSAEQNGILMYDGQDAHLAVELFNGRIRVSYDVGNHPVST 1244
            |::..||:::.......:||:::..::.|.||:|:|.|.:.|:||||:.||:|||||.|::|.|.
Zfish  1182 FINRESFLQIPSNLITEQANISLQIATDEDNGVLLYKGDNEHIAVELYRGRLRVSYDSGSYPPSA 1246

  Fly  1245 MYSFEMVADGKYHAVELLAIKKNFTLRVDRGLARSIINEGSNDYLKLTTPMFLGGLPVDPAQQAY 1309
            :||.|.:.||.:|.|||:|..::.:|.:|.|..:||....|...:....|::|||||......:.
Zfish  1247 IYSVETINDGSFHVVELVAKDQSLSLSIDGGSPKSINTANSPSPVPSPAPLYLGGLPQQSGLASL 1311

  Fly  1310 KNWQIRNLTSFKGCMKEVWINHKLVDFGNAQRQQKITPGCALLE----GEQQEEEDDEQDFMDET 1370
            :....||.:||.||::.::||.:|.|......|:.:.|||...:    ...|.....:..|..|.
Zfish  1312 RQGSGRNGSSFHGCIRNLYINDQLQDLTQFLLQEGVVPGCQPCQRSMCAHGQCHATGQSSFSCEC 1376

  Fly  1371 ------PHIKEEPVDPCLENKCRRGSRCVPNSNARDGYQCKCKHGQRGRYCDQGEGSTEPPTVTA 1429
                  |...::..:||..|||..||....||.:   |.|:|..|..|..||: |....|....|
Zfish  1377 EAGWTGPLCDQQVNNPCDGNKCIHGSCMAINSYS---YSCRCLPGFAGVLCDE-EEQLSPCQYIA 1437

  Fly  1430 AS-----------------------------TCRKEQVREYYTEND----CRSRQPLKYAKCVGG 1461
            ..                             .||.|:||::|....    |:|.:.:...:|.|.
Zfish  1438 CKYGRCRVSGLGKAYCECNSGYTGQSCDREMACRGERVRDHYQTQQGYAACQSTEKVSRLECRGS 1502

  Fly  1462 CGN--QCCAAKIVRRRKVRMVCSNNRKYIKNLDIVRKCGCTK 1501
            ||:  .|||....:|||....|::...:::.::.|.||||||
Zfish  1503 CGDGTSCCAPLRSKRRKYTFQCTDGSSFVQEVEKVVKCGCTK 1544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470 15/29 (52%)
leucine-rich repeat 83..104 CDD:275380 10/20 (50%)
LRR 98..>409 CDD:443914 148/310 (48%)
leucine-rich repeat 105..125 CDD:275380 10/19 (53%)
leucine-rich repeat 126..149 CDD:275380 14/22 (64%)
leucine-rich repeat 150..173 CDD:275380 11/22 (50%)
leucine-rich repeat 174..197 CDD:275380 10/22 (45%)
leucine-rich repeat 198..221 CDD:275380 11/22 (50%)
leucine-rich repeat 222..245 CDD:275380 11/22 (50%)
leucine-rich repeat 246..371 CDD:275380 53/124 (43%)
LRRCT 254..303 CDD:214507 21/48 (44%)
LRR <329..>498 CDD:443914 101/168 (60%)
leucine-rich repeat 372..395 CDD:275380 14/22 (64%)
leucine-rich repeat 396..415 CDD:275380 12/18 (67%)
leucine-rich repeat 420..443 CDD:275380 16/22 (73%)
leucine-rich repeat 444..465 CDD:275380 13/20 (65%)
leucine-rich repeat 468..480 CDD:275378 8/11 (73%)
LRRCT 476..525 CDD:214507 30/48 (63%)
leucine-rich repeat 484..545 CDD:275380 33/76 (43%)
LRRNT 542..574 CDD:214470 18/31 (58%)
leucine-rich repeat 552..570 CDD:275380 10/17 (59%)
LRR 572..>874 CDD:443914 146/326 (45%)
leucine-rich repeat 572..596 CDD:275380 10/23 (43%)
leucine-rich repeat 597..620 CDD:275380 11/22 (50%)
leucine-rich repeat 621..644 CDD:275380 9/46 (20%)
leucine-rich repeat 645..668 CDD:275380 10/22 (45%)
leucine-rich repeat 669..756 CDD:275380 42/87 (48%)
LRRCT 677..726 CDD:214507 24/48 (50%)
leucine-rich repeat 757..791 CDD:275380 14/33 (42%)
leucine-rich repeat 792..815 CDD:275380 14/22 (64%)
leucine-rich repeat 816..839 CDD:275380 12/22 (55%)
leucine-rich repeat 840..861 CDD:275380 12/20 (60%)
PCC 845..>986 CDD:188093 76/151 (50%)
EGF_CA 971..1007 CDD:238011 15/37 (41%)
EGF_CA 1009..1045 CDD:238011 18/44 (41%)
EGF_CA 1055..1086 CDD:238011 9/30 (30%)
EGF_CA 1088..1124 CDD:238011 15/35 (43%)
Laminin_G_1 1204..1335 CDD:395008 52/130 (40%)
CT 1435..1504 CDD:214482 24/73 (33%)
slit2XP_021331525.1 LRR <30..>204 CDD:443914 84/173 (49%)
leucine-rich repeat 32..49 CDD:275380 9/16 (56%)
leucine-rich repeat 50..73 CDD:275380 13/22 (59%)
leucine-rich repeat 74..97 CDD:275380 14/22 (64%)
leucine-rich repeat 98..121 CDD:275380 11/22 (50%)
leucine-rich repeat 122..145 CDD:275380 10/22 (45%)
leucine-rich repeat 146..169 CDD:275380 11/22 (50%)
leucine-rich repeat 170..193 CDD:275380 11/22 (50%)
PCC 175..>237 CDD:188093 27/61 (44%)
leucine-rich repeat 194..316 CDD:275380 53/124 (43%)
LRR <274..>443 CDD:443914 101/168 (60%)
leucine-rich repeat 317..340 CDD:275380 14/22 (64%)
leucine-rich repeat 341..361 CDD:275380 13/19 (68%)
leucine-rich repeat 389..412 CDD:275380 13/22 (59%)
LRRNT 503..533 CDD:214470 17/29 (59%)
leucine-rich repeat 513..531 CDD:275380 10/17 (59%)
LRR_4 535..573 CDD:463713 16/37 (43%)
leucine-rich repeat 535..557 CDD:275380 9/21 (43%)
leucine-rich repeat 558..581 CDD:275380 11/22 (50%)
LRR 562..>859 CDD:443914 133/297 (45%)
leucine-rich repeat 582..605 CDD:275380 1/22 (5%)
leucine-rich repeat 606..629 CDD:275380 8/22 (36%)
leucine-rich repeat 630..653 CDD:275380 10/22 (45%)
leucine-rich repeat 654..776 CDD:275380 56/122 (46%)
leucine-rich repeat 673..724 CDD:275380 17/50 (34%)
leucine-rich repeat 732..753 CDD:275380 12/20 (60%)
leucine-rich repeat 777..800 CDD:275380 14/22 (64%)
leucine-rich repeat 801..824 CDD:275380 12/22 (55%)
leucine-rich repeat 825..846 CDD:275380 12/20 (60%)
PCC 830..>1022 CDD:188093 93/192 (48%)
EGF 1011..1038 CDD:394967 12/27 (44%)
EGF_CA 1056..1092 CDD:238011 11/35 (31%)
EGF_CA 1094..1130 CDD:238011 15/35 (43%)
Laminin_G_2 1208..1334 CDD:460494 51/125 (41%)
GHB_like 1485..1546 CDD:473907 20/60 (33%)

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