DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sli and slit2

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:XP_021331524.1 Gene:slit2 / 80353 ZFINID:ZDB-GENE-010306-3 Length:1551 Species:Danio rerio


Alignment Length:1539 Identity:651/1539 - (42%)
Similarity:931/1539 - (60%) Gaps:121/1539 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 CPRVCSCTGLNVDCSHRGLTSVPRKISADVERLELQGNNLTVIYETDFQRLTKLRMLQLTDNQIH 137
            ||..|||:|..|||..:.|.||||.|..:||||:|..||||.|.:.||..|..||:|||.:|:|.
Zfish    21 CPSQCSCSGTAVDCHGQSLRSVPRNIPRNVERLDLNANNLTKITKADFAGLKNLRVLQLMENKIS 85

  Fly   138 TIERNSFQDLVSLERLRLNNNRLKAIPENFVTSSASLLRLDISNNVITTVGRRVFKGAQSLRSLQ 202
            :|||.:||||..|||||||.|.|:.:||.....:..|.|||:|.|.|..:.|:.|:|:..:::||
Zfish    86 SIERGAFQDLQELERLRLNRNNLQVLPELLFLGTTKLFRLDLSENQIQGIPRKAFRGSTEIKNLQ 150

  Fly   203 LDNNQITCLDEHAFKGLVELEILTLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSR 267
            ||.|||:|:::.||:.|.:||:|||||||::.|....|..:.:||..||..|...|||:::|||.
Zfish   151 LDYNQISCIEDGAFRALRDLEVLTLNNNNISRLSVASFNHMPKLRTFRLHSNNLLCDCNVAWLSD 215

  Fly   268 FLRSATRLAPYTRCQSPSQLKGQNVADLHDQEFKCSGLTE--HAPMECGAENSCPHPCRCADGIV 330
            :||...||..||:|.:|..|:|.|:|::..:||.|:..:|  .:...|.. ..||..|.|::.:|
Zfish   216 WLRQRPRLGLYTQCMAPPSLRGHNIAEVQKKEFMCTDFSEGPQSHSSCSV-LQCPELCTCSNNVV 279

  Fly   331 DCREKSLTSVPVTLPDDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQ 395
            |||.|.||.:|..||:..||:|||||.|..:|..:|:.::||||||||||.|:.:|.|:..||:.
Zfish   280 DCRGKGLTEIPTNLPETITEIRLEQNSIKIIPAGAFAPYKRLRRIDLSNNQITELASDSFQGLRS 344

  Fly   396 LTTLVLYGNKIKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANG 460
            |.:||||||||.:||.|:|.||.||||||||||:|:|:|.|:|:||.:|:|||||||.:|::|.|
Zfish   345 LNSLVLYGNKITELPKGLFDGLFSLQLLLLNANKINCLRVDSFQDLQNLNLLSLYDNKLQTIAKG 409

  Fly   461 TFDAMKSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 525
            ||.::::|:|:|||:|||:|||:|:||||||..||||||||||.||:|:..:||..::.:||:||
Zfish   410 TFSSLRAIQTLHLAQNPFMCDCHLKWLADYLQDNPIETSGARCTSPRRLANKRIGQIKSKKFRCS 474

  Fly   526 ----------------WDELRMKLSGECRMDSDCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTE 574
                            .::.|.||.|:|..|..||..|.||||||||:|:.|.:||..||.:|.|
Zfish   475 AKEQYFIPGIHHINKCVEDYRSKLGGDCFADLACPEKCRCEGTTVDCSGQKLTKIPDHIPQYTAE 539

  Fly   575 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE---------------- 623
            |.||:||...:.:.|:|.:||.|.|:.|..|::|.||...|||||.:.|                
Zfish   540 LRLNNNEFTVLEATGIFKKLPQLRKINLSNNKITDIEEGTFEGASGVNELILTSNRLEGVHYSML 604

  Fly   624 --------LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 680
                    |.|..|:|..::|..|.||..::.|:||||.|:.:.||:|:.|:||::|||.:||||
Zfish   605 KGLGGLRTLMLRSNRISCVNNGSFTGLSSVRLLSLYDNLITSMSPGAFDTLHSLSTLNLLANPFN 669

  Fly   681 CNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENSE-GCLGDGYCPPSCT 744
            |||||||..||||||.:..|..||.:|..::::.|:|:...:|.|...|.| .|.....||..|:
Zfish   670 CNCHLAWLGEWLRKKRIVTGNPRCQSPYFLKEIPIQDVAVQDFACEEGNDENSCSPLARCPAECS 734

  Fly   745 CTGTVVRCSRNQLKEIPRGIPAETSELYLESNEIEQIHYERIRHLRSLTRLDLSNNQITILSNYT 809
            |..||||||...||.:|:|||.:.:||||:.||..|:..| :.:.:.||.:|||||||:.|||::
Zfish   735 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNEFTQVPLE-LSNYKHLTLIDLSNNQISTLSNHS 798

  Fly   810 FANLTKLSTLIISYNKLQCLQRHALSGLNNLRVLSLHGNRISMLPEGSFEDLKSLTHIALGSNPL 874
            |:|:::|.|||:|||:|:|:...|..||.:||:||||||.|:::|:|:|:||.||:|:|||:|||
Zfish   799 FSNMSELLTLILSYNRLRCIPAKAFDGLKSLRLLSLHGNDIAVIPDGAFKDLSSLSHLALGANPL 863

  Fly   875 YCDCGLKWFSDWIKLDYVEPGIARCAEPEQMKDKLILSTPSSSFVCR-----------GRVRNDI 928
            ||||.::|.|||:|..|.|||||||..|..|.|||:|:|||..|.|.           |.|...|
Zfish   864 YCDCHMQWLSDWVKSGYKEPGIARCTGPGDMTDKLLLTTPSKKFTCTEVPGTCGFPVPGPVDVSI 928

  Fly   929 LAKCNACFEQPCQNQAQCVALPQREYQCLCQPGYHGKHCEFMIDACYGNPCRNNATCTVL--EEG 991
            |||||.|...||:|...|...|...|:|.|..|:.|:.||..|.||..|||:|..||.:.  ||.
Zfish   929 LAKCNPCLSNPCKNDGTCSNHPVDFYRCTCPYGFKGQDCEEPIHACISNPCQNGGTCHLKDGEEN 993

  Fly   992 RFSCQCAPGYTGARCETNIDDCLGEIKCQNNATCIDGVESYKCECQPGFS---------GEFCDT 1047
            ...|.|..|:.|..||.||||| .:..|:||:||:||:.:|.|.|.|.::         ||.|:.
Zfish   994 THWCVCPEGFEGDECEINIDDC-EDNDCENNSTCVDGINNYTCLCSPEYTAANNNEVEKGELCED 1057

  Fly  1048 KIQFCSPEFNPCANGAKCMDHFTHYSCDCQAGFHGTNCTDNIDDCQNHMCQNGGTCVDGINDYQC 1112
            |:.||:.|.|.|.:.:||:.....:.|:|..|:.|.:|..:.|||:::.|:||..|:|.:|.|.|
Zfish  1058 KLDFCASELNLCQHDSKCILTAKGFMCECTPGYTGEHCEVDFDDCEDNKCKNGAQCIDAVNGYTC 1122

  Fly  1113 RCPDDYTGKYCEGHNMISMMYPQTSPCQNHECKHGVCFQPNAQGSDYLCRCHPGYTGKWCEYLTS 1177
            .||:.|:|.:||...  .|:.|:||||.:::|.:|.  |...:.:|.:|:|.|||.|..||.|.|
Zfish  1123 VCPEGYSGLFCEFSP--PMVLPRTSPCDHYDCANGA--QCVVKDTDPVCQCLPGYEGVHCERLVS 1183

  Fly  1178 ISFVHNNSFVELEPLRTRPEANVTIVFSSAEQNGILMYDGQDAHLAVELFNGRIRVSYDVGNHPV 1242
            ::|::..||:::.......:||:::..::.|.||:|:|.|.:.|:||||:.||:|||||.|::|.
Zfish  1184 VNFINRESFLQIPSNLITEQANISLQIATDEDNGVLLYKGDNEHIAVELYRGRLRVSYDSGSYPP 1248

  Fly  1243 STMYSFEMVADGKYHAVELLAIKKNFTLRVDRGLARSIINEGSNDYLKLTTPMFLGGLPVDPAQQ 1307
            |.:||.|.:.||.:|.|||:|..::.:|.:|.|..:||....|...:....|::|||||......
Zfish  1249 SAIYSVETINDGSFHVVELVAKDQSLSLSIDGGSPKSINTANSPSPVPSPAPLYLGGLPQQSGLA 1313

  Fly  1308 AYKNWQIRNLTSFKGCMKEVWINHKLVDFGNAQRQQKITPGCALLE----GEQQEEEDDEQDFMD 1368
            :.:....||.:||.||::.::||.:|.|......|:.:.|||...:    ...|.....:..|..
Zfish  1314 SLRQGSGRNGSSFHGCIRNLYINDQLQDLTQFLLQEGVVPGCQPCQRSMCAHGQCHATGQSSFSC 1378

  Fly  1369 ET------PHIKEEPVDPCLENKCRRGSRCVPNSNARDGYQCKCKHGQRGRYCDQGEGSTEPPTV 1427
            |.      |...::..:||..|||..||....||.:   |.|:|..|..|..||: |....|...
Zfish  1379 ECEAGWTGPLCDQQVNNPCDGNKCIHGSCMAINSYS---YSCRCLPGFAGVLCDE-EEQLSPCQY 1439

  Fly  1428 TAAS-----------------------------TCRKEQVREYYTEND----CRSRQPLKYAKCV 1459
            .|..                             .||.|:||::|....    |:|.:.:...:|.
Zfish  1440 IACKYGRCRVSGLGKAYCECNSGYTGQSCDREMACRGERVRDHYQTQQGYAACQSTEKVSRLECR 1504

  Fly  1460 GGCGN--QCCAAKIVRRRKVRMVCSNNRKYIKNLDIVRKCGCTK 1501
            |.||:  .|||....:|||....|::...:::.::.|.||||||
Zfish  1505 GSCGDGTSCCAPLRSKRRKYTFQCTDGSSFVQEVEKVVKCGCTK 1548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470 15/29 (52%)
leucine-rich repeat 83..104 CDD:275380 10/20 (50%)
LRR_8 102..160 CDD:290566 35/57 (61%)
leucine-rich repeat 105..125 CDD:275380 10/19 (53%)
LRR_RI <119..259 CDD:238064 65/139 (47%)
leucine-rich repeat 126..149 CDD:275380 14/22 (64%)
LRR_8 149..208 CDD:290566 26/58 (45%)
leucine-rich repeat 150..173 CDD:275380 11/22 (50%)
leucine-rich repeat 174..197 CDD:275380 10/22 (45%)
LRR_8 197..256 CDD:290566 27/58 (47%)
leucine-rich repeat 198..221 CDD:275380 11/22 (50%)
leucine-rich repeat 222..245 CDD:275380 11/22 (50%)
leucine-rich repeat 246..371 CDD:275380 52/126 (41%)
LRRCT 254..303 CDD:214507 21/48 (44%)
LRRNT 319..350 CDD:214470 14/30 (47%)
LRR_8 349..406 CDD:290566 32/56 (57%)
LRR_4 371..411 CDD:289563 25/39 (64%)
leucine-rich repeat 372..395 CDD:275380 14/22 (64%)
leucine-rich repeat 396..415 CDD:275380 12/18 (67%)
leucine-rich repeat 420..443 CDD:275380 16/22 (73%)
leucine-rich repeat 444..465 CDD:275380 13/20 (65%)
leucine-rich repeat 468..480 CDD:275378 8/11 (73%)
LRRCT 476..525 CDD:214507 30/48 (63%)
leucine-rich repeat 484..545 CDD:275380 33/76 (43%)
LRRNT 542..574 CDD:214470 18/31 (58%)
leucine-rich repeat 552..570 CDD:275380 10/17 (59%)
leucine-rich repeat 572..596 CDD:275380 10/23 (43%)
LRR_RI <574..>678 CDD:238064 46/127 (36%)
LRR_8 595..655 CDD:290566 27/83 (33%)
leucine-rich repeat 597..620 CDD:275380 11/22 (50%)
leucine-rich repeat 621..644 CDD:275380 9/46 (20%)
leucine-rich repeat 645..668 CDD:275380 10/22 (45%)
leucine-rich repeat 669..756 CDD:275380 42/87 (48%)
LRRCT 677..726 CDD:214507 24/48 (50%)
LRRNT 739..770 CDD:214470 16/30 (53%)
leucine-rich repeat 757..791 CDD:275380 14/33 (42%)
LRR_4 770..807 CDD:289563 18/36 (50%)
LRR_8 790..850 CDD:290566 34/59 (58%)
LRR_4 791..830 CDD:289563 23/38 (61%)
leucine-rich repeat 792..815 CDD:275380 14/22 (64%)
LRR_4 814..863 CDD:289563 26/48 (54%)
leucine-rich repeat 816..839 CDD:275380 12/22 (55%)
leucine-rich repeat 840..861 CDD:275380 12/20 (60%)
LRRCT 872..920 CDD:214507 30/47 (64%)
EGF 935..966 CDD:278437 11/30 (37%)
EGF_CA 971..1007 CDD:238011 15/37 (41%)
EGF_CA 1009..1045 CDD:238011 18/44 (41%)
EGF_CA 1055..1086 CDD:238011 9/30 (30%)
EGF_CA 1088..1124 CDD:238011 15/35 (43%)
Laminin_G_1 1204..1335 CDD:278483 52/130 (40%)
CT 1435..1504 CDD:214482 24/73 (33%)
slit2XP_021331524.1 LRRNT 21..51 CDD:214470 15/29 (52%)
leucine-rich repeat 32..49 CDD:275380 9/16 (56%)
LRR_8 48..108 CDD:316378 35/59 (59%)
leucine-rich repeat 50..73 CDD:275380 13/22 (59%)
leucine-rich repeat 74..97 CDD:275380 14/22 (64%)
LRR_8 97..156 CDD:316378 26/58 (45%)
leucine-rich repeat 98..121 CDD:275380 11/22 (50%)
leucine-rich repeat 122..145 CDD:275380 10/22 (45%)
LRR_8 144..204 CDD:316378 27/59 (46%)
leucine-rich repeat 146..169 CDD:275380 11/22 (50%)
leucine-rich repeat 170..193 CDD:275380 11/22 (50%)
PCC 175..>237 CDD:188093 27/61 (44%)
leucine-rich repeat 194..320 CDD:275380 52/126 (41%)
LRRNT 267..299 CDD:214470 14/31 (45%)
LRR_8 298..355 CDD:316378 32/56 (57%)
leucine-rich repeat 321..344 CDD:275380 14/22 (64%)
leucine-rich repeat 345..365 CDD:275380 13/19 (68%)
LRR_8 375..427 CDD:316378 29/51 (57%)
leucine-rich repeat 393..416 CDD:275380 13/22 (59%)
PCC 398..>461 CDD:188093 40/62 (65%)
LRRNT 507..537 CDD:214470 17/29 (59%)
leucine-rich repeat 517..535 CDD:275380 10/17 (59%)
leucine-rich repeat 539..561 CDD:275380 9/21 (43%)
LRR_8 560..620 CDD:316378 17/59 (29%)
leucine-rich repeat 562..585 CDD:275380 11/22 (50%)
leucine-rich repeat 586..609 CDD:275380 1/22 (5%)
LRR_8 609..668 CDD:316378 24/58 (41%)
leucine-rich repeat 610..633 CDD:275380 8/22 (36%)
leucine-rich repeat 634..657 CDD:275380 10/22 (45%)
PCC 639..>716 CDD:188093 39/76 (51%)
leucine-rich repeat 658..780 CDD:275380 56/122 (46%)
leucine-rich repeat 677..728 CDD:275380 17/50 (34%)
NEL <698..>863 CDD:330839 78/165 (47%)
leucine-rich repeat 736..757 CDD:275380 12/20 (60%)
LRR_8 780..839 CDD:316378 34/58 (59%)
leucine-rich repeat 781..804 CDD:275380 14/22 (64%)
leucine-rich repeat 805..828 CDD:275380 12/22 (55%)
leucine-rich repeat 829..850 CDD:275380 12/20 (60%)
PCC 834..>1026 CDD:188093 93/192 (48%)
EGF 1015..1042 CDD:306513 12/27 (44%)
EGF_CA 1060..1096 CDD:238011 11/35 (31%)
EGF_CA 1098..1134 CDD:238011 15/35 (43%)
Laminin_G_2 1210..1338 CDD:308045 51/127 (40%)
GHB_like 1489..1550 CDD:328788 20/60 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 111 1.000 Domainoid score I6186
eggNOG 1 0.900 - - E2759_KOG4237
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3516
Inparanoid 1 1.050 1305 1.000 Inparanoid score I151
OMA 1 1.010 - - QHG45950
OrthoDB 1 1.010 - - D20003at33208
OrthoFinder 1 1.000 - - FOG0001593
OrthoInspector 1 1.000 - - otm24689
orthoMCL 1 0.900 - - OOG6_103623
Panther 1 1.100 - - O PTHR45836
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1145
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.840

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