DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sli and slit3

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_001072738.1 Gene:slit3 / 780195 XenbaseID:XB-GENE-991050 Length:1519 Species:Xenopus tropicalis


Alignment Length:1526 Identity:656/1526 - (42%)
Similarity:922/1526 - (60%) Gaps:134/1526 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 CPRVCSCTGLNVDCSHRGLTSVPRKISADVERLELQGNNLTVIYETDFQRLTKLRMLQLTDNQIH 137
            ||..|:|:|.||||...||.:||:.|..:.|||::..||:|.|.:|||..|..||:|.|.||||.
 Frog    30 CPSKCTCSGPNVDCHGLGLKTVPKGIPRNAERLDMDKNNITRITKTDFAGLKNLRVLHLEDNQIS 94

  Fly   138 TIERNSFQDLVSLERLRLNNNRLKAIPENFVTSSASLLRLDISNNVITTVGRRVFKGAQSLRSLQ 202
            .|||.:||||..|||:|||.|:|:.:||....::|.|.|||:|.|.|..:.|:.|:|...:::||
 Frog    95 IIERGAFQDLKQLERMRLNKNKLQVLPELLFQNNAKLTRLDLSENQIQGLPRKSFRGITDVKNLQ 159

  Fly   203 LDNNQITCLDEHAFKGLVELEILTLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSR 267
            ||||||:|:::..|:.|.|||||||||||:|.:|...|..:.::|.|||..|...|||||:|||.
 Frog   160 LDNNQISCIEDGVFRALRELEILTLNNNNITRIPLTSFNHMPKIRTLRLHSNYLYCDCHLTWLSD 224

  Fly   268 FLRSATRLAPYTRCQSPSQLKGQNVADLHDQEFKCSGLTEHAPMECGAEN-SCPHPCRCADGIVD 331
            :||....:..:|.|.||..|:|.||||:..::|.|.| |:..|..|.|.. |||..|.|::.:||
 Frog   225 WLRQRKTIGQFTFCMSPVHLRGFNVADVQKKDFVCPG-TQSEPPSCNANAVSCPSACTCSNNVVD 288

  Fly   332 CREKSLTSVPVTLPDDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQL 396
            ||.|.||.:|..||:...|:|||||.|..:|...|:.:::|:|||:|.|.||.||.||.||||.|
 Frog   289 CRGKGLTEIPANLPEGIIEIRLEQNSIKAIPAGVFTPYKKLKRIDISKNQISEIAADAFSGLKSL 353

  Fly   397 TTLVLYGNKIKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGT 461
            |:||||||||.::|.|:|.||.||||||||||:|:|:|.:.|:||.:|:|||||||.:|:::.|.
 Frog   354 TSLVLYGNKITEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKGL 418

  Fly   462 FDAMKSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCSW 526
            |..::||:|:|||:|||:|||:|:||||||..||||||||||.||:|:..:||..::.:||:|:.
 Frog   419 FAPLQSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCTSPRRLANKRISQIKSKKFRCTG 483

  Fly   527 DE-LRMKLSGECRMDSDCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGL 590
            .| .|.|.||:|.||..||..|.||||.|||:.:.:..||..:|.:|::|.|||||:..:.:.|:
 Frog   484 SEDYRSKFSGDCFMDLVCPEKCRCEGTIVDCSNQKISRIPSYLPEYTSDLRLNDNEITVLEATGI 548

  Fly   591 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT-------- 647
            |.:||:|.|:.|..|::..|...||:||:.:|||.|..|:::.:..:||.||..|||        
 Frog   549 FKKLPNLRKINLSNNKIKDIREGAFDGAAGVQELMLTGNQLESVHGRMFRGLVGLKTLMLRSNLM 613

  Fly   648 ----------------LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS 696
                            |:||||:|:.:.||:|..|.||:::||.||||||||||||..:|||||.
 Frog   614 SCINNDTFTGLSSVRLLSLYDNRITTITPGAFNTLVSLSTINLLSNPFNCNCHLAWLGKWLRKKR 678

  Fly   697 LNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENSEGCLGDGYCPPSCTCTGTVVRCSRNQLKEIP 761
            :..|..||..|..::::.|:|:...:|.|.......||...:||..|||..:||||....|:.:|
 Frog   679 VVSGNPRCQKPYFLKEIPIQDVAIQDFTCDGNEESSCLPASHCPEQCTCVESVVRCGNQGLRTLP 743

  Fly   762 RGIPAETSELYLESNEIEQIHYERIRHLRSLTRLDLSNNQITILSNYTFANLTKLSTLIISYNKL 826
            :.||.:.:|||||.|.:..:..| |...:.||.:|||||.|::||||||:|:|:|||||:|||:|
 Frog   744 KNIPKDVTELYLEGNHLTSVPKE-ISSFKHLTLIDLSNNSISVLSNYTFSNVTQLSTLILSYNRL 807

  Fly   827 QCLQRHALSGLNNLRVLSLHGNRISMLPEGSFEDLKSLTHIALGSNPLYCDCGLKWFSDWIKLDY 891
            :|:..||.:||.:||||:||||.||.:|:|||.||.||:|:|||:|||||||.|:|.|:|:|..|
 Frog   808 RCIPVHAFNGLKSLRVLTLHGNDISTVPDGSFSDLTSLSHLALGTNPLYCDCNLRWLSEWVKAGY 872

  Fly   892 VEPGIARCAEPEQMKDKLILSTPSSSFVCRGRVRNDILAKCNACFEQPCQNQAQCVALPQREYQC 956
            .|||||||:.||.|.|:|:|:||:..|.|:|.|..:|.:|||.||..||:|...|.:.|...|:|
 Frog   873 KEPGIARCSGPEDMADRLLLTTPTQKFQCKGPVDMNIASKCNPCFSNPCKNNGTCNSDPVELYRC 937

  Fly   957 LCQPGYHGKHCEFMIDACYGNPCRNNATCTVLEEGR--FSCQCAPGYTGARCETNIDDCLGEIKC 1019
            .|..|:.|:.|:..|:||...||.|..||...|..:  |||.|..|:.|.:|..|.||| .:..|
 Frog   938 TCPFGFKGRDCDIPINACIQAPCENGGTCHTNEANKDGFSCSCPLGFEGEKCGINPDDC-EDNDC 1001

  Fly  1020 QNNATCIDGVESYKCECQPGFSGEFCDTKIQFCSPEFNPCANGAKCMDHFTHYSCDCQAGFHGTN 1084
            :|.|||:||:.:|.|.|.|.::||.||..|..|.||.|||.:.:||:.....|.|:|..||.|.:
 Frog  1002 ENFATCVDGINNYICLCPPNYTGELCDEVIDHCVPELNPCLHDSKCISTDKGYMCECSPGFVGQH 1066

  Fly  1085 CTDNIDDCQNHMCQNGGTCVDGINDYQCRCPDDYTGKYCEGHNMIS--MMYPQTSPCQNHECKHG 1147
            |..|.|||.||.|::|..|:|.|..|.|.||..::|.:||    ||  |:..|||||.|:||   
 Frog  1067 CETNEDDCANHKCRHGAQCIDDIGGYTCVCPPGFSGLFCE----ISPPMVLLQTSPCDNYEC--- 1124

  Fly  1148 VCFQPNAQ----GSDYLCRCHPGYTGKWCEYLTSISFVHNNSFVELEPLRTRPEANVTIVFSSAE 1208
               |..||    ..:.:|||..|:.|:.||.|.:::||..:|:|||.....||:||:::..::.:
 Frog  1125 ---QNKAQCIVVQQEPVCRCLAGFAGQRCEKLITVNFVGKDSYVELSGSSVRPQANISLQVATDK 1186

  Fly  1209 QNGILMYDGQDAHLAVELFNGRIRVSYDVGNHPVSTMYSFEMVADGKYHAVELLAIKKNFTLRVD 1273
            .||||:|.|.:..||:||:.|.:|:.||..|.|.:|:||.|.:.||.:|.|||:.:.::.:|.||
 Frog  1187 DNGILLYKGDNDPLALELYQGHVRLIYDTLNSPPTTVYSVETINDGLFHTVELVMLNQSLSLVVD 1251

  Fly  1274 RGLARSIINEGSNDYLKLTTPMFLGGLPVDPAQQAYKNWQIRNLT-----SFKGCMKEVWINHKL 1333
            :||.:|:........|.|.||::|||:|  ||....   .:|..|     .|.||:.:|.||::|
 Frog  1252 KGLPKSLGKLQKQPSLNLNTPLYLGGIP--PASGVP---SMRQRTDHIPIGFNGCIHDVRINNEL 1311

  Fly  1334 VDF----------------------GNAQRQQKITPGCALLEGEQQEEEDDEQDFMDETPHIKEE 1376
            .||                      |:.:..:|.:..|....|......|.|.|           
 Frog  1312 QDFRDLPPVSIGVFPGCKSCNICKHGSCRSMEKTSVICECFPGWTGSMCDQEID----------- 1365

  Fly  1377 PVDPCLENKCRRGSRCVPNSNARDGYQCKCKHGQRGRYCDQGEGST------------------- 1422
              :.|:.:||..| .||..:||   |.|||..|..|:|||:...|.                   
 Frog  1366 --NTCINHKCIHG-ECVAANNA---YMCKCAEGYTGQYCDKKNDSLSSCRNFKCNHGQCKLSERG 1424

  Fly  1423 EP-----PTVTA-----ASTCRKEQVREY------YTENDCRSRQPLKYAKCVGGCGN-QCCAAK 1470
            :|     |..|.     .:.|:.|.:||.      ||  .|.|...:...:|.|.|.: .||...
 Frog  1425 DPYCECDPNFTGEHCDKENVCQGEVIREIVRKQHAYT--SCTSTVRVPRTECSGNCSSGACCVPV 1487

  Fly  1471 IVRRRKVRMVCSNNRKYIKNLDIVRKCGCTK 1501
            ..|:||....|.:...:::.|:...:|||::
 Frog  1488 KSRKRKYTFQCMDGTSFVEELERYIECGCSQ 1518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470 14/29 (48%)
leucine-rich repeat 83..104 CDD:275380 9/20 (45%)
LRR_8 102..160 CDD:290566 33/57 (58%)
leucine-rich repeat 105..125 CDD:275380 9/19 (47%)
LRR_RI <119..259 CDD:238064 69/139 (50%)
leucine-rich repeat 126..149 CDD:275380 15/22 (68%)
LRR_8 149..208 CDD:290566 27/58 (47%)
leucine-rich repeat 150..173 CDD:275380 10/22 (45%)
leucine-rich repeat 174..197 CDD:275380 10/22 (45%)
LRR_8 197..256 CDD:290566 30/58 (52%)
leucine-rich repeat 198..221 CDD:275380 11/22 (50%)
leucine-rich repeat 222..245 CDD:275380 13/22 (59%)
leucine-rich repeat 246..371 CDD:275380 56/125 (45%)
LRRCT 254..303 CDD:214507 22/48 (46%)
LRRNT 319..350 CDD:214470 14/30 (47%)
LRR_8 349..406 CDD:290566 33/56 (59%)
LRR_4 371..411 CDD:289563 26/39 (67%)
leucine-rich repeat 372..395 CDD:275380 15/22 (68%)
leucine-rich repeat 396..415 CDD:275380 12/18 (67%)
leucine-rich repeat 420..443 CDD:275380 15/22 (68%)
leucine-rich repeat 444..465 CDD:275380 11/20 (55%)
leucine-rich repeat 468..480 CDD:275378 8/11 (73%)
LRRCT 476..525 CDD:214507 30/48 (63%)
leucine-rich repeat 484..545 CDD:275380 34/61 (56%)
LRRNT 542..574 CDD:214470 14/31 (45%)
leucine-rich repeat 552..570 CDD:275380 6/17 (35%)
leucine-rich repeat 572..596 CDD:275380 10/23 (43%)
LRR_RI <574..>678 CDD:238064 46/127 (36%)
LRR_8 595..655 CDD:290566 27/83 (33%)
leucine-rich repeat 597..620 CDD:275380 9/22 (41%)
leucine-rich repeat 621..644 CDD:275380 9/22 (41%)
leucine-rich repeat 645..668 CDD:275380 13/46 (28%)
leucine-rich repeat 669..756 CDD:275380 39/86 (45%)
LRRCT 677..726 CDD:214507 23/48 (48%)
LRRNT 739..770 CDD:214470 13/30 (43%)
leucine-rich repeat 757..791 CDD:275380 12/33 (36%)
LRR_4 770..807 CDD:289563 17/36 (47%)
LRR_8 790..850 CDD:290566 38/59 (64%)
LRR_4 791..830 CDD:289563 26/38 (68%)
leucine-rich repeat 792..815 CDD:275380 15/22 (68%)
LRR_4 814..863 CDD:289563 31/48 (65%)
leucine-rich repeat 816..839 CDD:275380 14/22 (64%)
leucine-rich repeat 840..861 CDD:275380 14/20 (70%)
LRRCT 872..920 CDD:214507 29/47 (62%)
EGF 935..966 CDD:278437 12/30 (40%)
EGF_CA 971..1007 CDD:238011 15/37 (41%)
EGF_CA 1009..1045 CDD:238011 17/35 (49%)
EGF_CA 1055..1086 CDD:238011 12/30 (40%)
EGF_CA 1088..1124 CDD:238011 16/35 (46%)
Laminin_G_1 1204..1335 CDD:278483 51/135 (38%)
CT 1435..1504 CDD:214482 20/74 (27%)
slit3NP_001072738.1 LRRNT 29..60 CDD:214470 14/29 (48%)
LRR_8 57..117 CDD:290566 33/59 (56%)
LRR_4 60..97 CDD:289563 19/36 (53%)
leucine-rich repeat 60..82 CDD:275380 11/21 (52%)
LRR_RI <83..216 CDD:238064 66/132 (50%)
leucine-rich repeat 83..106 CDD:275380 15/22 (68%)
LRR_8 105..165 CDD:290566 27/59 (46%)
leucine-rich repeat 107..130 CDD:275380 10/22 (45%)
leucine-rich repeat 131..154 CDD:275380 10/22 (45%)
LRR_8 155..213 CDD:290566 30/57 (53%)
leucine-rich repeat 155..178 CDD:275380 11/22 (50%)
leucine-rich repeat 179..202 CDD:275380 13/22 (59%)
leucine-rich repeat 203..305 CDD:275380 47/102 (46%)
TPKR_C2 211..260 CDD:301599 22/48 (46%)
LRRNT 276..307 CDD:214470 14/30 (47%)
LRR_8 307..363 CDD:290566 33/55 (60%)
leucine-rich repeat 307..328 CDD:275380 9/20 (45%)
LRR_4 327..367 CDD:289563 26/39 (67%)
leucine-rich repeat 329..352 CDD:275380 15/22 (68%)
LRR_8 351..435 CDD:290566 50/83 (60%)
leucine-rich repeat 353..373 CDD:275380 13/19 (68%)
leucine-rich repeat 377..400 CDD:275380 15/22 (68%)
leucine-rich repeat 401..422 CDD:275380 11/20 (55%)
leucine-rich repeat 425..516 CDD:275380 54/90 (60%)
TPKR_C2 433..>463 CDD:301599 23/29 (79%)
LRRNT 501..531 CDD:214470 13/29 (45%)
LRR_4 533..570 CDD:289563 15/36 (42%)
leucine-rich repeat 533..554 CDD:275380 9/20 (45%)
LRR_8 553..613 CDD:290566 22/59 (37%)
leucine-rich repeat 555..578 CDD:275380 9/22 (41%)
leucine-rich repeat 579..602 CDD:275380 9/22 (41%)
LRR_8 602..661 CDD:290566 19/58 (33%)
leucine-rich repeat 603..626 CDD:275380 3/22 (14%)
leucine-rich repeat 627..650 CDD:275380 10/22 (45%)
leucine-rich repeat 651..741 CDD:275380 40/89 (45%)
LRRCT 659..708 CDD:214507 23/48 (48%)
LRRNT 720..752 CDD:214470 13/31 (42%)
leucine-rich repeat 742..772 CDD:275380 11/30 (37%)
LRR_8 771..831 CDD:290566 38/59 (64%)
leucine-rich repeat 773..796 CDD:275380 15/22 (68%)
LRR_4 795..836 CDD:289563 25/40 (63%)
leucine-rich repeat 797..820 CDD:275380 14/22 (64%)
leucine-rich repeat 821..842 CDD:275380 14/20 (70%)
LRRCT 853..902 CDD:214507 29/48 (60%)
EGF 916..947 CDD:278437 12/30 (40%)
EGF_CA 952..989 CDD:238011 15/36 (42%)
EGF_CA 994..1027 CDD:238011 16/33 (48%)
EGF_CA 1031..1068 CDD:238011 15/36 (42%)
EGF_CA 1070..1106 CDD:238011 16/35 (46%)
LamG 1155..1308 CDD:238058 58/157 (37%)
GHB_like 1454..1517 CDD:304424 16/64 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 76 1.000 Domainoid score I8796
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1341 1.000 Inparanoid score I144
OMA 1 1.010 - - QHG45950
OrthoDB 1 1.010 - - D20003at33208
OrthoFinder 1 1.000 - - FOG0001593
OrthoInspector 1 1.000 - - otm47721
Panther 1 1.100 - - O PTHR45836
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3290
SonicParanoid 1 1.000 - - X1145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.110

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