DRSC/TRiP Functional Genomics Resources

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Protein Alignment sli and rtn4rl1

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_001072520.1 Gene:rtn4rl1 / 779975 XenbaseID:XB-GENE-961465 Length:455 Species:Xenopus tropicalis


Alignment Length:715 Identity:144/715 - (20%)
Similarity:213/715 - (29%) Gaps:309/715 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 GIHIPGGGVGVITEARCPRVCSC--TGLNVDCSHRGLTSVPRKISADVERLELQGNNLTVIYETD 119
            |:.||       ..:.||..|.|  |.:.|.|......::|..|..:.||:.||.|.:|:::..|
 Frog    16 GLQIP-------LISLCPVNCVCYPTPMTVSCQAHNFGAIPEGIPENSERIFLQNNQITMLHRGD 73

  Fly   120 FQRLTKLRMLQLTDNQIHTIERNSFQDLVSLERLRLNNNRLKAIPENFVTSSASLLRLDISNNVI 184
            |                                                  ..||:.|.:.:|.|
 Frog    74 F--------------------------------------------------GPSLVTLWLYSNNI 88

  Fly   185 TTVGRRVFKGAQSLRSLQL-DNNQITCLDEHAFKGLVELEILTLNNNNLTSLPHNIFGGLGRLRA 248
            |.:....|:|..:|..|.| ||..:..|....|:||..|..|.|....|:|||..||.||..|:.
 Frog    89 TFIDPATFEGFDNLEELDLGDNRYLRALAADTFQGLSRLHALHLYKCGLSSLPSGIFSGLHSLQF 153

  Fly   249 LRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPSQLKGQNVADLHDQEFKCSGLTEHAPMEC 313
            |.|.||..                                          ||             
 Frog   154 LYLQDNYI------------------------------------------EF------------- 163

  Fly   314 GAENSCPHPCRCADGIVDCREKSLTSVPVTLPDDTTELRLEQNFITELPPKSFSSFRRLRRIDLS 378
                                          |.||..                         |||.
 Frog   164 ------------------------------LQDDIF-------------------------IDLV 173

  Fly   379 NNNISRIAHDALSGLKQLTTLVLYGNKIKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHS 443
            |                |:.|.|:|||:..|....|:||.:|..|||:.|::..:.:.||.||..
 Frog   174 N----------------LSYLFLHGNKLWSLHQNTFRGLVNLDRLLLHQNQLQWVHRTAFHDLKR 222

  Fly   444 LSLLSLYDNNIQSLANGTFDAMKSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKR 508
            |::|.|::|::..|.......:.:::.:.|..||:.|.|..|.|.::|......:|...||||..
 Frog   223 LTMLFLFNNSLTELQGECLAHLSALEFLRLNGNPWDCGCKARSLWEWLRGFRGSSSNVICESPDH 287

  Fly   509 MHRRRIESLREEKFKCSWDELRMKLSGECRMDSDCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTT 573
            :....::.|:.|.|                        .||.|:          |....|..||.
 Frog   288 LAGMDLKVLKTEDF------------------------MHCSGS----------ESLHQIKTHTF 318

  Fly   574 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 638
                  :...||:..|      |                     .||        :..||...::
 Frog   319 ------STTHRIAHKG------H---------------------HSH--------HSSKEKGKEL 342

  Fly   639 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAAR 703
            .:||||.:.....|.:.....||.                 ||..|          |:.|    |
 Frog   343 DVGLHQNEPAAPPDPRPGSRKPGK-----------------NCTSH----------KNRN----R 376

  Fly   704 CGAPSKVRDV-QIKDLP---HSEFKCSSENSEGCLGDGYCPPSCTCTGTVVRCSRNQLKEIPRGI 764
            ...|..|:.: .::|..   |.:|..           |..|.:.|...|  :|:|.....||.|:
 Frog   377 ISKPVSVKSMNDLQDYAPDYHHKFNF-----------GTLPTASTKRKT--KCTRRTPVRIPSGV 428

  Fly   765  764
             Frog   429  428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470 9/31 (29%)
leucine-rich repeat 83..104 CDD:275380 4/20 (20%)
LRR_8 102..160 CDD:290566 8/57 (14%)
leucine-rich repeat 105..125 CDD:275380 6/19 (32%)
LRR_RI <119..259 CDD:238064 35/140 (25%)
leucine-rich repeat 126..149 CDD:275380 0/22 (0%)
LRR_8 149..208 CDD:290566 13/59 (22%)
leucine-rich repeat 150..173 CDD:275380 0/22 (0%)
leucine-rich repeat 174..197 CDD:275380 7/22 (32%)
LRR_8 197..256 CDD:290566 25/59 (42%)
leucine-rich repeat 198..221 CDD:275380 9/23 (39%)
leucine-rich repeat 222..245 CDD:275380 11/22 (50%)
leucine-rich repeat 246..371 CDD:275380 10/124 (8%)
LRRCT 254..303 CDD:214507 3/48 (6%)
LRRNT 319..350 CDD:214470 3/30 (10%)
LRR_8 349..406 CDD:290566 9/56 (16%)
LRR_4 371..411 CDD:289563 11/39 (28%)
leucine-rich repeat 372..395 CDD:275380 4/22 (18%)
leucine-rich repeat 396..415 CDD:275380 7/18 (39%)
leucine-rich repeat 420..443 CDD:275380 9/22 (41%)
leucine-rich repeat 444..465 CDD:275380 5/20 (25%)
leucine-rich repeat 468..480 CDD:275378 3/11 (27%)
LRRCT 476..525 CDD:214507 15/48 (31%)
leucine-rich repeat 484..545 CDD:275380 11/60 (18%)
LRRNT 542..574 CDD:214470 7/31 (23%)
leucine-rich repeat 552..570 CDD:275380 2/17 (12%)
leucine-rich repeat 572..596 CDD:275380 4/23 (17%)
LRR_RI <574..>678 CDD:238064 15/103 (15%)
LRR_8 595..655 CDD:290566 10/59 (17%)
leucine-rich repeat 597..620 CDD:275380 0/22 (0%)
leucine-rich repeat 621..644 CDD:275380 4/22 (18%)
leucine-rich repeat 645..668 CDD:275380 3/22 (14%)
leucine-rich repeat 669..756 CDD:275380 17/90 (19%)
LRRCT 677..726 CDD:214507 11/52 (21%)
LRRNT 739..770 CDD:214470 8/26 (31%)
leucine-rich repeat 757..791 CDD:275380 3/8 (38%)
LRR_4 770..807 CDD:289563
LRR_8 790..850 CDD:290566
LRR_4 791..830 CDD:289563
leucine-rich repeat 792..815 CDD:275380
LRR_4 814..863 CDD:289563
leucine-rich repeat 816..839 CDD:275380
leucine-rich repeat 840..861 CDD:275380
LRRCT 872..920 CDD:214507
EGF 935..966 CDD:278437
EGF_CA 971..1007 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1055..1086 CDD:238011
EGF_CA 1088..1124 CDD:238011
Laminin_G_1 1204..1335 CDD:278483
CT 1435..1504 CDD:214482
rtn4rl1NP_001072520.1 LRRNT 25..53 CDD:279764 8/27 (30%)
leucine-rich repeat 37..58 CDD:275380 4/20 (20%)
PLN00113 46..>255 CDD:331614 77/384 (20%)
leucine-rich repeat 78..101 CDD:275380 7/22 (32%)
leucine-rich repeat 102..126 CDD:275380 9/23 (39%)
leucine-rich repeat 127..150 CDD:275380 11/22 (50%)
leucine-rich repeat 151..174 CDD:275380 13/132 (10%)
LRR_8 174..233 CDD:316378 24/74 (32%)
leucine-rich repeat 175..198 CDD:275380 10/22 (45%)
leucine-rich repeat 199..222 CDD:275380 9/22 (41%)
leucine-rich repeat 223..246 CDD:275380 5/22 (23%)
TPKR_C2 255..>290 CDD:326558 12/34 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45836
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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