DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sli and Vasn

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_001102852.1 Gene:Vasn / 679921 RGDID:1598149 Length:673 Species:Rattus norvegicus


Alignment Length:499 Identity:123/499 - (24%)
Similarity:191/499 - (38%) Gaps:106/499 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   543 CPAMCHC-EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 606
            ||:.|.| :..||.||.|....:|||:|..|..|.:.:|.:..:.. |.|...|.|..|:|.:||
  Rat    25 CPSGCQCNQPQTVFCTARQGTTVPRDVPPDTVGLYIFENGITTLDV-GCFAGFPGLQLLDLSQNQ 88

  Fly   607 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 671
            :|.:....|:...::..|.|..||:.||||:.|.||.:|:.|.|..|:|..:.||:|:.|:.|..
  Rat    89 ITSLPGGIFQPLVNLSNLDLTANKLHEISNETFRGLRRLERLYLGKNRIRHIQPGAFDALDHLLE 153

  Fly   672 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENSEGCLGD 736
            |.|..|..                       |...|..:..:.:.||.|                
  Rat   154 LKLPDNEL-----------------------RVLPPLHLPRLLLLDLSH---------------- 179

  Fly   737 GYCPPSCTCTGTVVRCSRNQLKEIPRGI--PAETSELYLESNEIEQIHYERIRHLRSLTRLDLSN 799
                              |.:..:..||  .|....|.|....:.|:.......||:|..||:|:
  Rat   180 ------------------NSIPALEAGILDTANVEALRLAGLGLRQLDEGLFGRLRNLHDLDVSD 226

  Fly   800 NQITILSNYTFANLTKLSTLIISYN-KLQCLQRHALSGLNNLRVLSLHGNRISMLPEGSFEDLKS 863
            ||:..:.: ....|..|:.|.::.| ::..::...|:||..|:.|.:....:..||    .||.|
  Rat   227 NQLGHMPS-VIQGLRGLTRLRLAGNTRIAQIRPEDLAGLTALQELDVSNLSLQALP----SDLSS 286

  Fly   864 ----LTHIALGSNPLYCDCGLKWFSDWIKLDYV---EPGIARCAEPEQMKDKLILSTPSSSFVC- 920
                |..:|...||..|.|.|.||..|::..:|   .|...||..|.:...:|:|....:.|.| 
  Rat   287 LFPRLRLLAAARNPFNCLCPLSWFGPWVRESHVVLASPEETRCHFPPKNAGRLLLELDYADFGCP 351

  Fly   921 -----------RGRVRNDILAKCNAC--FEQPCQNQAQC-----VALPQREYQCLCQPGYHGKHC 967
                       |..||....:..:..  :..|.:...|.     .|.|      ..:|....:.|
  Rat   352 VTTTTATVPTIRPTVREPTPSTSSQAPTWPSPTEPTTQAPIVLSTAPP------TMRPAPQPQDC 410

  Fly   968 EFMIDACYGNPCRNNATCTVLEEGRFSCQCAPGYTGARCETNID 1011
            ...|       |.|..:|.|..:....|.|..|:.|..||:.::
  Rat   411 PASI-------CLNGGSCRVGAKHHLECLCPEGFIGLYCESPVE 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470
leucine-rich repeat 83..104 CDD:275380
LRR_8 102..160 CDD:290566
leucine-rich repeat 105..125 CDD:275380
LRR_RI <119..259 CDD:238064
leucine-rich repeat 126..149 CDD:275380
LRR_8 149..208 CDD:290566
leucine-rich repeat 150..173 CDD:275380
leucine-rich repeat 174..197 CDD:275380
LRR_8 197..256 CDD:290566
leucine-rich repeat 198..221 CDD:275380
leucine-rich repeat 222..245 CDD:275380
leucine-rich repeat 246..371 CDD:275380
LRRCT 254..303 CDD:214507
LRRNT 319..350 CDD:214470
LRR_8 349..406 CDD:290566
LRR_4 371..411 CDD:289563
leucine-rich repeat 372..395 CDD:275380
leucine-rich repeat 396..415 CDD:275380
leucine-rich repeat 420..443 CDD:275380
leucine-rich repeat 444..465 CDD:275380
leucine-rich repeat 468..480 CDD:275378
LRRCT 476..525 CDD:214507
leucine-rich repeat 484..545 CDD:275380 1/1 (100%)
LRRNT 542..574 CDD:214470 14/31 (45%)
leucine-rich repeat 552..570 CDD:275380 8/17 (47%)
leucine-rich repeat 572..596 CDD:275380 5/23 (22%)
LRR_RI <574..>678 CDD:238064 35/103 (34%)
LRR_8 595..655 CDD:290566 23/59 (39%)
leucine-rich repeat 597..620 CDD:275380 7/22 (32%)
leucine-rich repeat 621..644 CDD:275380 11/22 (50%)
leucine-rich repeat 645..668 CDD:275380 9/22 (41%)
leucine-rich repeat 669..756 CDD:275380 9/86 (10%)
LRRCT 677..726 CDD:214507 6/48 (13%)
LRRNT 739..770 CDD:214470 4/32 (13%)
leucine-rich repeat 757..791 CDD:275380 7/35 (20%)
LRR_4 770..807 CDD:289563 11/36 (31%)
LRR_8 790..850 CDD:290566 16/60 (27%)
LRR_4 791..830 CDD:289563 10/39 (26%)
leucine-rich repeat 792..815 CDD:275380 7/22 (32%)
LRR_4 814..863 CDD:289563 12/49 (24%)
leucine-rich repeat 816..839 CDD:275380 6/23 (26%)
leucine-rich repeat 840..861 CDD:275380 4/20 (20%)
LRRCT 872..920 CDD:214507 16/50 (32%)
EGF 935..966 CDD:278437 5/37 (14%)
EGF_CA 971..1007 CDD:238011 9/35 (26%)
EGF_CA 1009..1045 CDD:238011 0/3 (0%)
EGF_CA 1055..1086 CDD:238011
EGF_CA 1088..1124 CDD:238011
Laminin_G_1 1204..1335 CDD:278483
CT 1435..1504 CDD:214482
VasnNP_001102852.1 LRRNT 25..55 CDD:214470 13/29 (45%)
leucine-rich repeat 35..57 CDD:275380 10/21 (48%)
PPP1R42 58..257 CDD:411060 60/257 (23%)
leucine-rich repeat 58..78 CDD:275380 4/20 (20%)
leucine-rich repeat 79..102 CDD:275380 7/22 (32%)
leucine-rich repeat 103..126 CDD:275380 11/22 (50%)
leucine-rich repeat 127..150 CDD:275380 9/22 (41%)
leucine-rich repeat 151..194 CDD:275380 12/99 (12%)
leucine-rich repeat 195..218 CDD:275380 4/22 (18%)
leucine-rich repeat 219..241 CDD:275380 7/22 (32%)
leucine-rich repeat 242..266 CDD:275380 6/23 (26%)
leucine-rich repeat 267..290 CDD:275380 7/26 (27%)
PCC 271..>350 CDD:188093 23/82 (28%)
EGF 410..441 CDD:394967 10/37 (27%)
fn3 469..546 CDD:394996
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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