DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sli and Rtn4r

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_075358.1 Gene:Rtn4r / 65079 MGIID:2136886 Length:473 Species:Mus musculus


Alignment Length:562 Identity:124/562 - (22%)
Similarity:177/562 - (31%) Gaps:205/562 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 CPRVCSCTG---LNVDCSHRGLTSVPRKISADVERLELQGNNLTVIYETDFQRLTKLRMLQLTDN 134
            ||..|.|..   :...|..:||.:||..|.|..:|:.|.||.::.:....||....|.:|.|..|
Mouse    27 CPGACVCYNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISHVPAASFQSCRNLTILWLHSN 91

  Fly   135 QIHTIERNSFQDLVSLERLRLNNNRLKAIPENFVTSSASLLRLDISNNV-ITTVGRRVFKGAQSL 198
            .:..|:..:|..|..||                        :||:|:|. :..|....|.|...|
Mouse    92 ALARIDAAAFTGLTLLE------------------------QLDLSDNAQLHVVDPTTFHGLGHL 132

  Fly   199 RSLQLDNNQITCLDEHAFKGLVELEILTLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLS 263
            .:|.||...:..|....|:||..|:.|.|.:|||.:||.|.|..||                   
Mouse   133 HTLHLDRCGLRELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLG------------------- 178

  Fly   264 WLSRFLRSATRLAPYTRCQSPSQLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADG 328
                                                                             
Mouse   179 ----------------------------------------------------------------- 178

  Fly   329 IVDCREKSLTSVPVTLPDDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGL 393
                                                                             
Mouse   179 ----------------------------------------------------------------- 178

  Fly   394 KQLTTLVLYGNKIKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLA 458
             .||.|.|:||:|..:|...|:||.||..|||:.|.::.:...|||||..|..|.|:.||:..|.
Mouse   179 -NLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP 242

  Fly   459 NGTFDAMKSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFK 523
            ......::|::.:.|..||::|||..|.|..:|.|....:|...|..|:|:..|.::.|.....:
Mouse   243 AEVLMPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCNLPQRLADRDLKRLAASDLE 307

  Fly   524 -CS--------------WDELRMKLSGECRMDSDCPAMCHCEGTTVDCTGRGLK--EIPRDIPLH 571
             |:              .||..:.|...|:.|:...|.....|.... .|..||  ..|.|.|  
Mouse   308 GCAVASGPFRPIQTSQLTDEELLSLPKCCQPDAADKASVLEPGRPAS-AGNALKGRVPPGDTP-- 369

  Fly   572 TTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEP 612
                  ..|..| |..:|..||.||...:..|...:..|.||
Mouse   370 ------PGNGSGPRHINDSPFGTLPSSAEPPLTALRPGGSEP 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470 11/32 (34%)
leucine-rich repeat 83..104 CDD:275380 7/20 (35%)
LRR_8 102..160 CDD:290566 15/57 (26%)
leucine-rich repeat 105..125 CDD:275380 5/19 (26%)
LRR_RI <119..259 CDD:238064 38/140 (27%)
leucine-rich repeat 126..149 CDD:275380 7/22 (32%)
LRR_8 149..208 CDD:290566 13/59 (22%)
leucine-rich repeat 150..173 CDD:275380 2/22 (9%)
leucine-rich repeat 174..197 CDD:275380 7/23 (30%)
LRR_8 197..256 CDD:290566 20/58 (34%)
leucine-rich repeat 198..221 CDD:275380 8/22 (36%)
leucine-rich repeat 222..245 CDD:275380 11/22 (50%)
leucine-rich repeat 246..371 CDD:275380 0/124 (0%)
LRRCT 254..303 CDD:214507 0/48 (0%)
LRRNT 319..350 CDD:214470 0/30 (0%)
LRR_8 349..406 CDD:290566 6/56 (11%)
LRR_4 371..411 CDD:289563 7/39 (18%)
leucine-rich repeat 372..395 CDD:275380 0/22 (0%)
leucine-rich repeat 396..415 CDD:275380 8/18 (44%)
leucine-rich repeat 420..443 CDD:275380 10/22 (45%)
leucine-rich repeat 444..465 CDD:275380 6/20 (30%)
leucine-rich repeat 468..480 CDD:275378 3/11 (27%)
LRRCT 476..525 CDD:214507 15/49 (31%)
leucine-rich repeat 484..545 CDD:275380 16/75 (21%)
LRRNT 542..574 CDD:214470 8/33 (24%)
leucine-rich repeat 552..570 CDD:275380 5/19 (26%)
leucine-rich repeat 572..596 CDD:275380 7/24 (29%)
LRR_RI <574..>678 CDD:238064 12/40 (30%)
LRR_8 595..655 CDD:290566 5/18 (28%)
leucine-rich repeat 597..620 CDD:275380 4/16 (25%)
leucine-rich repeat 621..644 CDD:275380
leucine-rich repeat 645..668 CDD:275380
leucine-rich repeat 669..756 CDD:275380
LRRCT 677..726 CDD:214507
LRRNT 739..770 CDD:214470
leucine-rich repeat 757..791 CDD:275380
LRR_4 770..807 CDD:289563
LRR_8 790..850 CDD:290566
LRR_4 791..830 CDD:289563
leucine-rich repeat 792..815 CDD:275380
LRR_4 814..863 CDD:289563
leucine-rich repeat 816..839 CDD:275380
leucine-rich repeat 840..861 CDD:275380
LRRCT 872..920 CDD:214507
EGF 935..966 CDD:278437
EGF_CA 971..1007 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1055..1086 CDD:238011
EGF_CA 1088..1124 CDD:238011
Laminin_G_1 1204..1335 CDD:278483
CT 1435..1504 CDD:214482
Rtn4rNP_075358.1 LRR 1 58..79 5/20 (25%)
LRR_8 60..115 CDD:290566 18/78 (23%)
leucine-rich repeat 60..82 CDD:275380 6/21 (29%)
LRR 2 82..103 6/20 (30%)
leucine-rich repeat 83..106 CDD:275380 7/22 (32%)
LRR_RI <90..>166 CDD:238064 25/99 (25%)
LRR 3 106..128 8/45 (18%)
leucine-rich repeat 107..131 CDD:275380 9/47 (19%)
LRR_8 131..190 CDD:290566 26/208 (13%)
LRR 4 131..152 6/20 (30%)
leucine-rich repeat 132..155 CDD:275380 8/22 (36%)
LRR 5 155..176 10/20 (50%)
LRR_4 156..195 CDD:289563 19/188 (10%)
leucine-rich repeat 156..179 CDD:275380 12/172 (7%)
LRR_8 179..238 CDD:290566 26/58 (45%)
LRR 6 179..200 9/20 (45%)
leucine-rich repeat 180..203 CDD:275380 11/22 (50%)
LRR 7 203..224 8/20 (40%)
leucine-rich repeat 204..227 CDD:275380 10/22 (45%)
LRR 8 227..248 6/20 (30%)
leucine-rich repeat 228..251 CDD:275380 6/22 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 346..446 19/69 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45836
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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