DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sli and nyx

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_001071085.1 Gene:nyx / 568821 ZFINID:ZDB-GENE-061026-3 Length:469 Species:Danio rerio


Alignment Length:468 Identity:110/468 - (23%)
Similarity:179/468 - (38%) Gaps:161/468 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   543 CPAMCHC---EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR 604
            ||..|.|   :..:|.|....:.::|::.|...:.:.|:.|.| :..|:..||.||.|..|.||.
Zfish    28 CPPTCTCTQEKSCSVLCDHVNMMDLPKEFPCEASSINLDKNSL-KFLSERAFGTLPSLKTLSLKY 91

  Fly   605 NQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 668
            |.::.|.|.||:|..::.||::..|: |:.:..:.|..|.:|..|:|.|    |           
Zfish    92 NNISFITPGAFKGLPNLVELKMAHNEYIRYLHTRTFTALKRLVRLDLSD----C----------- 141

  Fly   669 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV--RDVQIKDLPHSEFKCSSENSE 731
                    |.||                         .|.::  ..:.:|:|             
Zfish   142 --------NLFN-------------------------MPDRIFLEQITLKEL------------- 160

  Fly   732 GCLGDGYCPPSCTCTGTVVRCSRNQLKEIP---RGIPAETSELYLESNEIEQIHYERIRHLRSLT 793
                               .|.:|..:.:|   ||: ...:.:|||.|:||.:.|..:..|.||.
Zfish   161 -------------------LCFQNNFRRVPGALRGM-ENLTHVYLERNKIEAVAYNSLLGLTSLK 205

  Fly   794 RLDLSNNQITILSNYTFANLTKLSTLIISYNKLQCLQRHALSGLNNLRVLSLHG----------- 847
            .|:|..|:|.::.:..|.:|.:|....::.|.|..|.:.|..||:||::|:|.|           
Zfish   206 YLNLQENRINVIHDEAFKDLIRLENFYLNDNLLVDLPQQAFKGLSNLKMLNLGGNLLTNVSKTWF 270

  Fly   848 -------------NRISMLPEGSFEDLKSLTHIALGSN-----------PLY------------- 875
                         ||:|.:.:||||:|.||..:.|.||           |:|             
Zfish   271 SDLVELEVLYLDRNRLSYIEDGSFENLTSLITLHLNSNNLTSLPFSVFQPIYFIGRLYLFRNPWE 335

  Fly   876 CDCGLKWFSDWIKLDYVEPGIARCAEPEQMKDKLILSTP--SSSFVCRGRVRNDILAKCNA-CFE 937
            |.|.|:|..:|:: .|                ||:...|  |.|.|....:...:.|..|: |.:
Zfish   336 CTCDLEWLREWME-SY----------------KLVRDIPCASPSSVAGLDLSEVVFAHLNSTCLD 383

  Fly   938 QPCQNQAQCVALP 950
            .|..|..  .:||
Zfish   384 PPELNMT--TSLP 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470
leucine-rich repeat 83..104 CDD:275380
LRR_8 102..160 CDD:290566
leucine-rich repeat 105..125 CDD:275380
LRR_RI <119..259 CDD:238064
leucine-rich repeat 126..149 CDD:275380
LRR_8 149..208 CDD:290566
leucine-rich repeat 150..173 CDD:275380
leucine-rich repeat 174..197 CDD:275380
LRR_8 197..256 CDD:290566
leucine-rich repeat 198..221 CDD:275380
leucine-rich repeat 222..245 CDD:275380
leucine-rich repeat 246..371 CDD:275380
LRRCT 254..303 CDD:214507
LRRNT 319..350 CDD:214470
LRR_8 349..406 CDD:290566
LRR_4 371..411 CDD:289563
leucine-rich repeat 372..395 CDD:275380
leucine-rich repeat 396..415 CDD:275380
leucine-rich repeat 420..443 CDD:275380
leucine-rich repeat 444..465 CDD:275380
leucine-rich repeat 468..480 CDD:275378
LRRCT 476..525 CDD:214507
leucine-rich repeat 484..545 CDD:275380 1/1 (100%)
LRRNT 542..574 CDD:214470 8/33 (24%)
leucine-rich repeat 552..570 CDD:275380 3/17 (18%)
leucine-rich repeat 572..596 CDD:275380 7/23 (30%)
LRR_RI <574..>678 CDD:238064 29/104 (28%)
LRR_8 595..655 CDD:290566 21/60 (35%)
leucine-rich repeat 597..620 CDD:275380 10/22 (45%)
leucine-rich repeat 621..644 CDD:275380 6/23 (26%)
leucine-rich repeat 645..668 CDD:275380 5/22 (23%)
leucine-rich repeat 669..756 CDD:275380 7/88 (8%)
LRRCT 677..726 CDD:214507 6/50 (12%)
LRRNT 739..770 CDD:214470 5/33 (15%)
leucine-rich repeat 757..791 CDD:275380 11/36 (31%)
LRR_4 770..807 CDD:289563 14/36 (39%)
LRR_8 790..850 CDD:290566 21/83 (25%)
LRR_4 791..830 CDD:289563 11/38 (29%)
leucine-rich repeat 792..815 CDD:275380 7/22 (32%)
LRR_4 814..863 CDD:289563 20/72 (28%)
leucine-rich repeat 816..839 CDD:275380 7/22 (32%)
leucine-rich repeat 840..861 CDD:275380 11/44 (25%)
LRRCT 872..920 CDD:214507 14/73 (19%)
EGF 935..966 CDD:278437 5/16 (31%)
EGF_CA 971..1007 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1055..1086 CDD:238011
EGF_CA 1088..1124 CDD:238011
Laminin_G_1 1204..1335 CDD:278483
CT 1435..1504 CDD:214482
nyxNP_001071085.1 leucine-rich repeat 64..83 CDD:275380 7/19 (37%)
LRR_8 82..143 CDD:290566 22/83 (27%)
leucine-rich repeat 84..107 CDD:275380 10/22 (45%)
leucine-rich repeat 108..132 CDD:275380 6/23 (26%)
LRR_RI <127..311 CDD:238064 59/264 (22%)
leucine-rich repeat 133..179 CDD:275380 16/126 (13%)
LRR_8 179..238 CDD:290566 18/58 (31%)
leucine-rich repeat 180..203 CDD:275380 8/22 (36%)
leucine-rich repeat 204..227 CDD:275380 7/22 (32%)
LRR_8 227..286 CDD:290566 13/58 (22%)
leucine-rich repeat 228..251 CDD:275380 7/22 (32%)
leucine-rich repeat 252..275 CDD:275380 4/22 (18%)
LRR_8 275..333 CDD:290566 15/57 (26%)
leucine-rich repeat 276..299 CDD:275380 8/22 (36%)
leucine-rich repeat 300..319 CDD:275380 4/18 (22%)
LRRCT 332..>366 CDD:214507 12/50 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4237
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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