DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sli and zgc:153913

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_001073448.1 Gene:zgc:153913 / 559700 ZFINID:ZDB-GENE-061103-397 Length:496 Species:Danio rerio


Alignment Length:551 Identity:128/551 - (23%)
Similarity:215/551 - (39%) Gaps:129/551 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 CPRVCSC-TGLNVDCSHRGLTSVPRKISADVERLELQGNNLTVIYETD----------------- 119
            ||..|.| :|..:.||...:.|:|..||..|..|.:..:.:..:.:..                 
Zfish    21 CPEPCQCFSGSKLVCSDDRMKSLPVNISTQVRELIVVASGIPDLDQQSFPETLRLSKLVFLNGML 85

  Fly   120 -------FQRLTKLRMLQLTDNQI-HTIERNSFQDLVSLERLRLNNNRLKAIPENFVTSSASLLR 176
                   |:||.:||.|:::.|.. .:::..:|..|.:|.||.||||:|..:......|...|..
Zfish    86 KSVSGEAFERLVELRELEISGNICWMSLDIQTFSSLTNLTRLLLNNNKLSGVDAGLFHSLHQLEM 150

  Fly   177 LDISNNVITTVGRRVFKGAQSLRSLQLDNNQITCLDEHAFKGLVELEILTLNNNNLTSLPHNIFG 241
            |.:..|.::.:..|:|:....|:.|.|..|||:.|....|:...||.:|:|..|.:.:||..||.
Zfish   151 LQLRGNGLSFLSGRLFQRLHRLQELDLSFNQISSLSTELFQNNSELRVLSLQANKIPNLPDGIFT 215

  Fly   242 GLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPSQLKGQNVADLHDQEFKCSGLT 306
            .|..|:.|.|..|          |.|.|                                     
Zfish   216 HLDHLQELNLRSN----------LIRVL------------------------------------- 233

  Fly   307 EHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLPDDTTELRLEQNFITELPPKSFSSFRR 371
                                             .|.:.|.....|.|::|.:.:|....|.:...
Zfish   234 ---------------------------------TPGSFPASLKTLILKKNLLEKLTNAVFHTLHY 265

  Fly   372 LRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNKIKDLPSGVFKGLGSLQLLLLNANEISCIRKD 436
            :..:|||.|:::.:..|....|..|.||.|..|:|..|...|||||.|::.:.|..|.:..:...
Zfish   266 ITYLDLSQNSLTEVPADLFQNLISLETLDLSENRISTLAGSVFKGLFSIKSVYLQKNSLISVDAH 330

  Fly   437 AFRDLHSLSLLSLYDNNIQSLANGTFDAMKSIKTVHLAKNPFICDCNLRWLADYL---HKNPIET 498
            ..:|.|.|.||.|.:|:::|:.:|.|:.:.......|..||:.|||.:.:..|:|   ||:..:.
Zfish   331 LLKDQHDLQLLDLSNNSLRSIPSGFFEDLDFQCVFELRGNPWSCDCGIHYFYDWLKYNHKHVKDL 395

  Fly   499 SGARCESPKRMHRRRIESLREEKFKCSWDELRMKLSGECRMDSDCPAMCHCEGTTVDCTGRGLK- 562
            |...||:|:.:....:.|:..|:..||.:.           .|:.|.|...:..::.|:.:.|| 
Zfish   396 SRVSCEAPELIQGHNLRSVDREQLVCSRNS-----------SSNSPEMISVDEGSIQCSVQELKG 449

  Fly   563 ------EIPR--DIPLHTTELLLNDNELGRI 585
                  ::.:  ::.........|.||.||:
Zfish   450 TASIECKVTKCTNVKFQAAFQFANGNESGRV 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470 11/30 (37%)
leucine-rich repeat 83..104 CDD:275380 7/20 (35%)
LRR_8 102..160 CDD:290566 18/82 (22%)
leucine-rich repeat 105..125 CDD:275380 4/43 (9%)
LRR_RI <119..259 CDD:238064 45/164 (27%)
leucine-rich repeat 126..149 CDD:275380 6/23 (26%)
LRR_8 149..208 CDD:290566 18/58 (31%)
leucine-rich repeat 150..173 CDD:275380 9/22 (41%)
leucine-rich repeat 174..197 CDD:275380 5/22 (23%)
LRR_8 197..256 CDD:290566 22/58 (38%)
leucine-rich repeat 198..221 CDD:275380 8/22 (36%)
leucine-rich repeat 222..245 CDD:275380 9/22 (41%)
leucine-rich repeat 246..371 CDD:275380 14/124 (11%)
LRRCT 254..303 CDD:214507 4/48 (8%)
LRRNT 319..350 CDD:214470 2/30 (7%)
LRR_8 349..406 CDD:290566 16/56 (29%)
LRR_4 371..411 CDD:289563 13/39 (33%)
leucine-rich repeat 372..395 CDD:275380 6/22 (27%)
leucine-rich repeat 396..415 CDD:275380 8/18 (44%)
leucine-rich repeat 420..443 CDD:275380 3/22 (14%)
leucine-rich repeat 444..465 CDD:275380 8/20 (40%)
leucine-rich repeat 468..480 CDD:275378 3/11 (27%)
LRRCT 476..525 CDD:214507 15/51 (29%)
leucine-rich repeat 484..545 CDD:275380 13/63 (21%)
LRRNT 542..574 CDD:214470 5/40 (13%)
leucine-rich repeat 552..570 CDD:275380 3/26 (12%)
leucine-rich repeat 572..596 CDD:275380 5/14 (36%)
LRR_RI <574..>678 CDD:238064 5/12 (42%)
LRR_8 595..655 CDD:290566
leucine-rich repeat 597..620 CDD:275380
leucine-rich repeat 621..644 CDD:275380
leucine-rich repeat 645..668 CDD:275380
leucine-rich repeat 669..756 CDD:275380
LRRCT 677..726 CDD:214507
LRRNT 739..770 CDD:214470
leucine-rich repeat 757..791 CDD:275380
LRR_4 770..807 CDD:289563
LRR_8 790..850 CDD:290566
LRR_4 791..830 CDD:289563
leucine-rich repeat 792..815 CDD:275380
LRR_4 814..863 CDD:289563
leucine-rich repeat 816..839 CDD:275380
leucine-rich repeat 840..861 CDD:275380
LRRCT 872..920 CDD:214507
EGF 935..966 CDD:278437
EGF_CA 971..1007 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1055..1086 CDD:238011
EGF_CA 1088..1124 CDD:238011
Laminin_G_1 1204..1335 CDD:278483
CT 1435..1504 CDD:214482
zgc:153913NP_001073448.1 leucine-rich repeat 75..98 CDD:275380 3/22 (14%)
LRR_RI 141..>350 CDD:238064 66/288 (23%)
LRR_8 147..206 CDD:290566 18/58 (31%)
leucine-rich repeat 148..171 CDD:275380 5/22 (23%)
leucine-rich repeat 172..195 CDD:275380 8/22 (36%)
LRR_8 194..252 CDD:290566 22/137 (16%)
leucine-rich repeat 196..219 CDD:275380 9/22 (41%)
leucine-rich repeat 220..241 CDD:275380 9/100 (9%)
leucine-rich repeat 242..265 CDD:275380 5/22 (23%)
leucine-rich repeat 266..289 CDD:275380 6/22 (27%)
LRR_8 267..324 CDD:290566 21/56 (38%)
leucine-rich repeat 290..313 CDD:275380 12/22 (55%)
leucine-rich repeat 314..337 CDD:275380 3/22 (14%)
leucine-rich repeat 338..359 CDD:275380 8/20 (40%)
TPKR_C2 370..>404 CDD:301599 12/33 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.