DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sli and slit1a

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_001030140.1 Gene:slit1a / 556123 ZFINID:ZDB-GENE-030722-3 Length:1524 Species:Danio rerio


Alignment Length:1525 Identity:646/1525 - (42%)
Similarity:920/1525 - (60%) Gaps:121/1525 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 TEARCPRVCSCTGLNVDCSHRGLTSVPRKISADVERLELQGNNLTVIYETDFQRLTKLRMLQLTD 133
            |.:.||.:|:|:|..|||...||.::||.|..:.|||||.|||||.|...||..|..||:|||.:
Zfish    23 TGSGCPALCTCSGTTVDCHGLGLKNIPRNIPRNTERLELNGNNLTRINRNDFTGLKYLRVLQLME 87

  Fly   134 NQIHTIERNSFQDLVSLERLRLNNNRLKAIPENFVTSSASLLRLDISNNVITTVGRRVFKGAQSL 198
            |||.|:||.:|.::..|||||||.|:|..:||.....:|:|.|||:|.|.|..:.|:.|:||..:
Zfish    88 NQIVTVERGAFDEMRELERLRLNRNQLHQLPELLFQKNAALSRLDLSENFIQAIPRKAFRGATDI 152

  Fly   199 RSLQLDNNQITCLDEHAFKGLVELEILTLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLS 263
            ::||||.|.|:|:::.||:.:..||:|||||||::|:|.:.|..:.:||..||..|...|||.||
Zfish   153 KNLQLDKNHISCIEDGAFRAMRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLVCDCVLS 217

  Fly   264 WLSRFLRSATRLAPYTRCQSPSQLKGQNVADLHDQEFKCSGLTEHA-PMECG-AENSCPHPCRCA 326
            |||::||....:..:|:|.||:.|:|.|||::...||.|||.::.| ...|. :..|||..|.|.
Zfish   218 WLSQWLRERPNIGLFTQCSSPAPLRGLNVAEVQKHEFSCSGQSDSAVGQSCSLSSGSCPAVCSCN 282

  Fly   327 DGIVDCREKSLTSVPVTLPDDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALS 391
            :.|||||.|..|.:|.:|||..||:|||||.|..:||.:||.:::|||||||||.||.:|.||..
Zfish   283 NNIVDCRGKGPTLIPSSLPDSMTEIRLEQNSIKSIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 347

  Fly   392 GLKQLTTLVLYGNKIKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQS 456
            ||:.|.:||||||||.|||.|||.||.:|||||||||:|.|:|.:.|:||.:|||||||||.||:
Zfish   348 GLRSLNSLVLYGNKITDLPRGVFDGLHALQLLLLNANKIHCLRANTFQDLQNLSLLSLYDNKIQT 412

  Fly   457 LANGTFDAMKSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEK 521
            ||.|||.::::|:|:|||:|||||||||:||||||..||||||||||.||:|:..:||..::.:|
Zfish   413 LAKGTFSSLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCTSPRRLANKRIGQIKSKK 477

  Fly   522 FKCSWDEL-------RMKLSGECRMDSDCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLND 579
            |:||..|.       ..:|:.:|..|..|||.|.||...|||:...|..||..:|..|||..||:
Zfish   478 FRCSAKEQYAIPGTEDSRLNNDCNNDPVCPAKCRCESNVVDCSNLRLDRIPEHVPASTTEPRLNN 542

  Fly   580 NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE--------------------- 623
            ||:..|.:.|.|..|.||.|:.|..|:::.||..||||||.:.|                     
Zfish   543 NEITTIEAMGAFKTLTHLKKINLSNNKISEIEDGAFEGASSVNELHLTANQLDLAHSGMFRGLEG 607

  Fly   624 ---LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 685
               |.|..|:|..|.|..|.|||.::.|:||||.::.:.||:|:.|.||::|||.:|||||||.|
Zfish   608 LRMLMLRNNRISCIHNNSFTGLHNVRLLSLYDNTLTTIAPGAFDTLQSLSTLNLLANPFNCNCRL 672

  Fly   686 AWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENSE-GCLGDGYCPPSCTCTGTV 749
            ||.:.|||.:.:..|..||..|:.::::.::|:...:|:|..::.: .|....:||..|||..:|
Zfish   673 AWLSSWLRNRKIVTGNPRCHRPAFLKEIPLQDVAAPDFRCEDDHEDVSCAPPVHCPADCTCLESV 737

  Fly   750 VRCSRNQLKEIPRGIPAETSELYLESNEIEQIHYERIRHLRSLTRLDLSNNQITILSNYTFANLT 814
            ||||...|:.:|:|.|...:||||:.|::..:..| :...:||..:|||||:|:.|:|.:|.|::
Zfish   738 VRCSNKHLQALPKGTPRNITELYLDGNQLSTVPKE-LSSFKSLQLVDLSNNRISSLTNSSFTNMS 801

  Fly   815 KLSTLIISYNKLQCLQRHALSGLNNLRVLSLHGNRISMLPEGSFEDLKSLTHIALGSNPLYCDCG 879
            :|:|||:|||.|:|:...|.|||.:||:||||||.||.||:|.|.|.:||:|:|:|:|||:||||
Zfish   802 QLTTLILSYNALRCIPTLAFSGLRSLRLLSLHGNDISELPDGIFSDAQSLSHLAIGANPLHCDCG 866

  Fly   880 LKWFSDWIKLDYVEPGIARCAEPEQMKDKLILSTPSSSFVCRGRVRNDILAKCNACFEQPCQNQA 944
            |:|.|||:|..|.||||||||.|..|:.||:|:||:..|.|:|.|.:.||||||.|...||.:|.
Zfish   867 LRWLSDWVKTGYKEPGIARCASPHGMEGKLLLTTPAKRFECQGEVDSAILAKCNPCASGPCLHQG 931

  Fly   945 QCVALPQREYQCLCQPGYHGKHCEFMIDACYGNPCRNNATCTVL--EEGRFSCQCAPGYTGARCE 1007
            .|.|.....|:|.|..|:.||:||.:::||...||:|..||.|.  |:..:||.||.|:.|..||
Zfish   932 VCEADQTDSYRCRCADGFKGKNCETVVNACVSEPCKNGGTCHVSTDEDEGYSCSCAAGFEGPSCE 996

  Fly  1008 TNIDDCLGEIKCQNNATCIDGVESYKCECQPGFSGEFCDTKIQFCSPEFNPCANGAKCMDHFTHY 1072
            .:.|:| .:..|||.||||||:.:|.|.|.|.::||.|:.....||...:||...:.|....|..
Zfish   997 VDTDEC-RDNDCQNGATCIDGINNYTCLCAPFYTGEMCEDLEDMCSSARSPCKQQSTCFITVTGP 1060

  Fly  1073 SCDCQAGFHGTNCTDNIDDCQNHMCQNGGTCVDGINDYQCRCPDDYTGKYCEGHNMISMMYPQTS 1137
            .|.|.||:.|.:|:.|.|||::|.||||..|||.:|.|.|.|...|:|:.||      :..|..|
Zfish  1061 KCICAAGYVGEDCSVNYDDCKDHRCQNGAQCVDELNGYSCVCQKGYSGQLCE------VAPPPRS 1119

  Fly  1138 PCQNHECKHGV-CFQPNAQGSDYLCRCHPGYTGKWCEYLTSISFVHNNSFVELEPLRTRPEANVT 1201
            ||:..:|::.. |.:   :....||:|..|:.|..||.|.|::||..:|::.|..|:..|:||:|
Zfish  1120 PCERADCQNNAPCVE---RAGHPLCQCLEGFGGPRCEKLVSVNFVDRDSYLLLSDLKNWPQANIT 1181

  Fly  1202 IVFSSAEQNGILMYDGQDAHLAVELFNGRIRVSYDVGNHPVSTMYSFEMVADGKYHAVELLAIKK 1266
            :..|:||.||||:|:|.:.|:|||:..|.::||||.|:.....:||.|.|.||::|.|||:...:
Zfish  1182 LQVSTAEDNGILLYNGDNDHIAVEIHEGHVKVSYDPGSQQSHAIYSTETVNDGQFHTVELVTFDQ 1246

  Fly  1267 NFTLRVDRGLARSIINEGSNDYLKLTTPMFLGGLPVDPAQQAYKNWQIRNLTSFKGCMKEVWINH 1331
            ...|.:|.|...::.:.|....|:...|:::||:||.....|.:.|||:|.:||.||::.::||:
Zfish  1247 MVNLSIDGGSPTTMDSFGKVQPLRGEAPLYVGGMPVSVHPTAPRVWQIQNSSSFHGCIQNLYINN 1311

  Fly  1332 KLVDFGNAQRQQKITPGCA------LLEGEQQEEEDDEQDFMDETPHIKEEPV------------ 1378
            :|.||...|.:..:.|||.      .|.|..|             |:....||            
Zfish  1312 ELQDFTKTQMKPGVVPGCEPCRKIYCLHGICQ-------------PNTATGPVCHCQPGWSGQHC 1363

  Fly  1379 -----DPCLENKCRRGSRCVPNSNARDGYQCKCKHGQRGRYCDQGEGSTEP-------------- 1424
                 :||:.:||..| ||:|..  ...|:|:|:.|..|..|:|.|....|              
Zfish  1364 DQPLANPCMGSKCVHG-RCIPMD--MQSYRCECQEGFHGALCNQHEELFNPCRKLQCKHGHCQIS 1425

  Fly  1425 ----------PTVTA-----ASTCRKEQVREYYT----ENDCRSRQPLKYAKCVGGC-GNQCCAA 1469
                      |..:.     .|.||.|.||::|.    .:.|::.:.:.:.:|.|.| ...|||:
Zfish  1426 DTGDAYCHCEPGYSGDLCDRESECRGEPVRDFYQVQRGYSICQTTRMVSWVECSGVCESGSCCAS 1490

  Fly  1470 KIVRRRKVRMVCSNNRKYIKNLDIVRKCGC 1499
            :.::|||....||:...:.:.::...||||
Zfish  1491 QRMKRRKYSFECSDGMSFSEEVEKTIKCGC 1520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470 13/29 (45%)
leucine-rich repeat 83..104 CDD:275380 8/20 (40%)
LRR_8 102..160 CDD:290566 34/57 (60%)
leucine-rich repeat 105..125 CDD:275380 12/19 (63%)
LRR_RI <119..259 CDD:238064 64/139 (46%)
leucine-rich repeat 126..149 CDD:275380 12/22 (55%)
LRR_8 149..208 CDD:290566 28/58 (48%)
leucine-rich repeat 150..173 CDD:275380 11/22 (50%)
leucine-rich repeat 174..197 CDD:275380 11/22 (50%)
LRR_8 197..256 CDD:290566 26/58 (45%)
leucine-rich repeat 198..221 CDD:275380 9/22 (41%)
leucine-rich repeat 222..245 CDD:275380 12/22 (55%)
leucine-rich repeat 246..371 CDD:275380 59/126 (47%)
LRRCT 254..303 CDD:214507 22/48 (46%)
LRRNT 319..350 CDD:214470 15/30 (50%)
LRR_8 349..406 CDD:290566 35/56 (63%)
LRR_4 371..411 CDD:289563 27/39 (69%)
leucine-rich repeat 372..395 CDD:275380 16/22 (73%)
leucine-rich repeat 396..415 CDD:275380 14/18 (78%)
leucine-rich repeat 420..443 CDD:275380 15/22 (68%)
leucine-rich repeat 444..465 CDD:275380 16/20 (80%)
leucine-rich repeat 468..480 CDD:275378 8/11 (73%)
LRRCT 476..525 CDD:214507 32/48 (67%)
leucine-rich repeat 484..545 CDD:275380 31/67 (46%)
LRRNT 542..574 CDD:214470 14/31 (45%)
leucine-rich repeat 552..570 CDD:275380 6/17 (35%)
leucine-rich repeat 572..596 CDD:275380 11/23 (48%)
LRR_RI <574..>678 CDD:238064 47/127 (37%)
LRR_8 595..655 CDD:290566 29/83 (35%)
leucine-rich repeat 597..620 CDD:275380 11/22 (50%)
leucine-rich repeat 621..644 CDD:275380 10/46 (22%)
leucine-rich repeat 645..668 CDD:275380 9/22 (41%)
leucine-rich repeat 669..756 CDD:275380 35/87 (40%)
LRRCT 677..726 CDD:214507 19/48 (40%)
LRRNT 739..770 CDD:214470 14/30 (47%)
leucine-rich repeat 757..791 CDD:275380 10/33 (30%)
LRR_4 770..807 CDD:289563 15/36 (42%)
LRR_8 790..850 CDD:290566 33/59 (56%)
LRR_4 791..830 CDD:289563 21/38 (55%)
leucine-rich repeat 792..815 CDD:275380 11/22 (50%)
LRR_4 814..863 CDD:289563 28/48 (58%)
leucine-rich repeat 816..839 CDD:275380 13/22 (59%)
leucine-rich repeat 840..861 CDD:275380 14/20 (70%)
LRRCT 872..920 CDD:214507 30/47 (64%)
EGF 935..966 CDD:278437 11/30 (37%)
EGF_CA 971..1007 CDD:238011 15/37 (41%)
EGF_CA 1009..1045 CDD:238011 17/35 (49%)
EGF_CA 1055..1086 CDD:238011 9/30 (30%)
EGF_CA 1088..1124 CDD:238011 18/35 (51%)
Laminin_G_1 1204..1335 CDD:278483 51/130 (39%)
CT 1435..1504 CDD:214482 20/70 (29%)
slit1aNP_001030140.1 LRRNT 26..57 CDD:214470 13/30 (43%)
leucine-rich repeat 36..55 CDD:275380 8/18 (44%)
LRR_8 54..114 CDD:290566 34/59 (58%)
leucine-rich repeat 56..79 CDD:275380 14/22 (64%)
leucine-rich repeat 80..103 CDD:275380 12/22 (55%)
LRR_8 102..162 CDD:290566 28/59 (47%)
LRR_RI <104..227 CDD:238064 59/122 (48%)
leucine-rich repeat 104..127 CDD:275380 11/22 (50%)
leucine-rich repeat 128..151 CDD:275380 11/22 (50%)
leucine-rich repeat 152..175 CDD:275380 9/22 (41%)
LRR_8 153..210 CDD:290566 26/56 (46%)
leucine-rich repeat 176..199 CDD:275380 12/22 (55%)
leucine-rich repeat 200..327 CDD:275380 59/126 (47%)
TPKR_C2 208..257 CDD:301599 22/48 (46%)
LRRNT 275..306 CDD:214470 15/30 (50%)
LRR_8 303..362 CDD:290566 35/58 (60%)
LRR_4 326..366 CDD:289563 26/39 (67%)
leucine-rich repeat 328..351 CDD:275380 16/22 (73%)
LRR_8 350..434 CDD:290566 54/83 (65%)
leucine-rich repeat 352..372 CDD:275380 15/19 (79%)
LRR_RI <394..620 CDD:238064 104/225 (46%)
leucine-rich repeat 400..423 CDD:275380 16/22 (73%)
leucine-rich repeat 424..521 CDD:275380 52/96 (54%)
leucine-rich repeat 522..559 CDD:275380 15/36 (42%)
LRR_8 558..618 CDD:290566 17/59 (29%)
leucine-rich repeat 560..583 CDD:275380 11/22 (50%)
leucine-rich repeat 584..607 CDD:275380 1/22 (5%)
LRR_8 607..666 CDD:290566 25/58 (43%)
leucine-rich repeat 608..631 CDD:275380 9/22 (41%)
leucine-rich repeat 632..653 CDD:275380 8/20 (40%)
leucine-rich repeat 656..747 CDD:275380 36/90 (40%)
LRRCT 664..712 CDD:214507 19/47 (40%)
leucine-rich repeat 748..778 CDD:275380 9/30 (30%)
LRR_8 754..813 CDD:290566 25/59 (42%)
LRR_4 755..794 CDD:289563 15/39 (38%)
LRR_4 777..820 CDD:289563 21/42 (50%)
leucine-rich repeat 779..802 CDD:275380 11/22 (50%)
leucine-rich repeat 803..823 CDD:275380 10/19 (53%)
leucine-rich repeat 827..850 CDD:275380 15/22 (68%)
LRRCT 859..908 CDD:214507 30/48 (63%)
EGF_CA 920..955 CDD:238011 13/34 (38%)
EGF_CA 958..996 CDD:238011 15/37 (41%)
EGF_CA 998..1034 CDD:238011 17/36 (47%)
EGF_CA 1078..1112 CDD:238011 17/33 (52%)
LamG 1179..1312 CDD:214598 52/132 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 111 1.000 Domainoid score I6186
eggNOG 1 0.900 - - E2759_KOG4237
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1305 1.000 Inparanoid score I151
OMA 1 1.010 - - QHG45950
OrthoDB 1 1.010 - - D20003at33208
OrthoFinder 1 1.000 - - FOG0001593
OrthoInspector 1 1.000 - - otm24689
orthoMCL 1 0.900 - - OOG6_103623
Panther 1 1.100 - - O PTHR45836
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3290
SonicParanoid 1 1.000 - - X1145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.910

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