DRSC/TRiP Functional Genomics Resources

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Protein Alignment sli and rtn4rl1b

DIOPT Version :10

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_982347.1 Gene:rtn4rl1b / 403308 ZFINID:ZDB-GENE-040310-3 Length:478 Species:Danio rerio


Alignment Length:459 Identity:108/459 - (23%)
Similarity:152/459 - (33%) Gaps:178/459 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 CPRVCSC--TGLNVDCSHRGLTSVPRKISADVERLELQGNNLTVIYETDFQRLTKLRMLQLTDNQ 135
            |||.|.|  ....|.|......|||..|....||:.||.|.:..:.:..|...|.  .|.:..|.
Zfish    23 CPRHCICYMAPSTVSCQAHNFLSVPEGIPPHSERIFLQNNKIHRLLQGHFSPTTV--TLWIYSNN 85

  Fly   136 IHTIERNSFQDLVSLERLRLNNNRLKAIPENFVTSSASLLRLDISNNVITTVGRRVFKGAQSLRS 200
            |..||.::||....||.|.|.:||.                                     |||
Zfish    86 ITYIEPSTFQGFTLLEELDLGDNRY-------------------------------------LRS 113

  Fly   201 LQLDNNQITCLDEHAFKGLVELEILTLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWL 265
            |..:          .|.||..|..|.|....|::||:|||.||..|:.|.|.||      ||.:|
Zfish   114 LSAE----------TFHGLGRLHALHLYRCGLSALPNNIFQGLRNLQYLYLQDN------HLEYL 162

  Fly   266 SRFLRSATRLAPYTRCQSPSQLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIV 330
            .                                                                
Zfish   163 Q---------------------------------------------------------------- 163

  Fly   331 DCREKSLTSVPVTLPDDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQ 395
                           ||..                         :||.|                
Zfish   164 ---------------DDLF-------------------------VDLHN---------------- 172

  Fly   396 LTTLVLYGNKIKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANG 460
            |:.|.|:||::..|....|:|||:|..|||:.|::..:.:.||.||..|:.|.|::|::..||..
Zfish   173 LSHLFLHGNRLWSLHQNTFRGLGALDRLLLHHNQLQWVDRLAFHDLRRLTTLYLFNNSLTELAGE 237

  Fly   461 TFDAMKSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKF-KC 524
            ....:.:::.:.|..||:.|||....|.|:|.|....||...|.:|..:..:.::.||:|.| .|
Zfish   238 CLTQLPALEYLRLNDNPWECDCKALSLWDWLKKFRGSTSSVGCVAPAELAGKDLKQLRKEDFPNC 302

  Fly   525 SWDE 528
            |..|
Zfish   303 SGSE 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470 11/31 (35%)
leucine-rich repeat 83..104 CDD:275380 6/20 (30%)
LRR 98..>409 CDD:443914 57/310 (18%)
leucine-rich repeat 105..125 CDD:275380 4/19 (21%)
leucine-rich repeat 126..149 CDD:275380 7/22 (32%)
leucine-rich repeat 150..173 CDD:275380 6/22 (27%)
leucine-rich repeat 174..197 CDD:275380 0/22 (0%)
leucine-rich repeat 198..221 CDD:275380 7/22 (32%)
leucine-rich repeat 222..245 CDD:275380 11/22 (50%)
leucine-rich repeat 246..371 CDD:275380 10/124 (8%)
LRRCT 254..303 CDD:214507 4/48 (8%)
LRR <329..>498 CDD:443914 40/168 (24%)
leucine-rich repeat 372..395 CDD:275380 3/22 (14%)
leucine-rich repeat 396..415 CDD:275380 6/18 (33%)
leucine-rich repeat 420..443 CDD:275380 9/22 (41%)
leucine-rich repeat 444..465 CDD:275380 6/20 (30%)
leucine-rich repeat 468..480 CDD:275378 3/11 (27%)
LRRCT 476..525 CDD:214507 17/49 (35%)
leucine-rich repeat 484..545 CDD:275380 15/46 (33%)
LRRNT 542..574 CDD:214470
leucine-rich repeat 552..570 CDD:275380
LRR 572..>874 CDD:443914
leucine-rich repeat 572..596 CDD:275380
leucine-rich repeat 597..620 CDD:275380
leucine-rich repeat 621..644 CDD:275380
leucine-rich repeat 645..668 CDD:275380
leucine-rich repeat 669..756 CDD:275380
LRRCT 677..726 CDD:214507
leucine-rich repeat 757..791 CDD:275380
leucine-rich repeat 792..815 CDD:275380
leucine-rich repeat 816..839 CDD:275380
leucine-rich repeat 840..861 CDD:275380
PCC 845..>986 CDD:188093
EGF_CA 971..1007 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1055..1086 CDD:238011
EGF_CA 1088..1124 CDD:238011
Laminin_G_1 1204..1335 CDD:395008
CT 1435..1504 CDD:214482
rtn4rl1bNP_982347.1 leucine-rich repeat 35..56 CDD:275380 6/20 (30%)
LRR <55..308 CDD:443914 97/427 (23%)
leucine-rich repeat 57..75 CDD:275380 4/17 (24%)
leucine-rich repeat 77..99 CDD:275380 7/23 (30%)
leucine-rich repeat 100..124 CDD:275380 13/70 (19%)
leucine-rich repeat 125..148 CDD:275380 11/22 (50%)
leucine-rich repeat 149..172 CDD:275380 12/132 (9%)
leucine-rich repeat 173..196 CDD:275380 9/22 (41%)
leucine-rich repeat 197..220 CDD:275380 9/22 (41%)
leucine-rich repeat 221..244 CDD:275380 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.

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