DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sli and Tlr9

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_937764.1 Gene:Tlr9 / 338457 RGDID:631352 Length:1032 Species:Rattus norvegicus


Alignment Length:1073 Identity:248/1073 - (23%)
Similarity:360/1073 - (33%) Gaps:362/1073 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 VITEA----RCPRVCSCT----GLNVDCSHRGLTSVPRKISAD----VERLELQGNNLTVIYETD 119
            |:.||    ..|....|.    || |||:...|.|||...:|:    :..|.|..|.:..::..|
  Rat    19 VLAEALALGTLPAFLPCELKPHGL-VDCNWLFLKSVPHFSAAEPRSNITSLSLIANRIHHLHNLD 82

  Fly   120 FQRLTKLRMLQLTDN-------QIH-----TIERNSFQDLVSLERLRLNNNRLKAIPENFVTSSA 172
            |..|..:|.|.|..|       .:|     |||..:|..:..||.|.|:.|.:..:|.    ..:
  Rat    83 FVHLPNVRQLNLKWNCPPPGLSPLHFSCRMTIEPKTFLAMRMLEELNLSYNGITTVPR----LPS 143

  Fly   173 SLLRLDISNNVITTVGRRVFKGAQSLRSLQLDNN---QITC-----LDEHAFKGLVELEILTLNN 229
            ||..|.:|:..|..:......|..|||.|.:|.|   :..|     :...||.||..|..|:|..
  Rat   144 SLTNLSLSHTNILVLDASSLAGLHSLRVLFMDGNCYYKNPCNGAVNVTPDAFLGLSNLTHLSLKY 208

  Fly   230 NNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPSQLKGQNVAD 294
            ||||.:|..:   ...|..|.||.|                ...:|.|    :..:.|....|.|
  Rat   209 NNLTEVPRQL---PPSLEYLLLSYN----------------LIVKLGP----EDLANLTSLRVLD 250

  Fly   295 LHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVT-----------LPDDT 348
            :.....:|    :|||..|                .:||:|||...|.|           |.|.:
  Rat   251 VGGNCRRC----DHAPDLC----------------TECRQKSLDLHPQTFHHLSHLEGLVLKDSS 295

  Fly   349 ---------------TELRLEQNFITELPPK--SFSSFRRLRRIDLSNNNISRIAHDALSGLKQL 396
                           :.|.|.:||:.|...|  :|.:..|||::|||.|...:::...|      
  Rat   296 LHSLNSKWFQGLVNLSVLDLSENFLYESINKTSAFQNLTRLRKLDLSFNYCKKVSFARL------ 354

  Fly   397 TTLVLYGNKIKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFR------DLHSLSLLSLYDNNIQ 455
                       .|.|. ||.|.|||.|.:|......:.|:..|      .||:|.|...:.|..|
  Rat   355 -----------HLASS-FKSLVSLQELNMNGIFFRLLNKNTLRWLAGLPKLHTLHLQMNFINQAQ 407

  Fly   456 SLANGTFDAMKSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREE 520
            .....||.|::.                            ::.|..|...|..:.|...|...|.
  Rat   408 LSVFSTFRALRF----------------------------VDLSNNRISGPPTLSRVAPEKADEA 444

  Fly   521 KFKCSWDELRMKLSGECRMDSDCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRI 585
            :....|..            |..||:   ..|.|                               
  Rat   445 EKGVPWPA------------SLTPAL---PSTPV------------------------------- 463

  Fly   586 SSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTL 648
             |.....|..:| ..::|.||.|..|:|..|...||:|.|.|..|.|.: ::...||.|..||.|
  Rat   464 -SKNFMVRCKNLRFTMDLSRNNLVTIKPEMFVNLSHLQCLSLSHNCIAQAVNGSQFLPLTNLKVL 527

  Fly   649 NLYDNQISCVMPGSFEHLNSLTSLNLA--SNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVR 711
            :|..|::......||..|..|.:|:|:  |.||                |:.|........:.:.
  Rat   528 DLSYNKLDLYHSKSFSELPQLQALDLSYNSQPF----------------SMQGIGHNFSFLANLS 576

  Fly   712 DVQIKDLPHSEFKCSSENSEGCLGDGYCPPSCTCTGTVVRCSRNQLKEIPRGIPAETSELYLESN 776
            .:|...|.|::..                            ||            .:|.||..|.
  Rat   577 RLQNLSLAHNDIH----------------------------SR------------VSSRLYSTSV 601

  Fly   777 EI--------------EQIHYERIRHLRSLTRLDLSNNQITILS----NYTFANLTKLSTLIISY 823
            |.              |.::....:.||||..||||.|::.||.    ||...:|||||   ...
  Rat   602 EYLDFSGNGVGRMWDEEDLYLYFFQDLRSLIHLDLSQNKLHILRPQNLNYLPKSLTKLS---FRD 663

  Fly   824 NKLQCLQRHALSGLNNLRVLSLHGNRISMLPEGSFE---------------------------DL 861
            |.|......:|:.|.|||.|.|.||.:..|..|:..                           :|
  Rat   664 NHLSFFNWSSLAFLPNLRDLDLAGNLLKALTNGTLPNGTLLQKLDVSSNSIVFVVPAFFALAVEL 728

  Fly   862 K----------------------SLTHIALGSNPLYCDCGLKWFSDWIKLDYVEPGIA---RCAE 901
            |                      :||.:.:.||||:|.||..:....:::....||:|   :|..
  Rat   729 KEVNLSHNILKTVDRSWFGPIVMNLTVLDVSSNPLHCACGAPFVDLLLEVQTKVPGLANGVKCGS 793

  Fly   902 PEQMKDKLILSTPSSSFVCRGRVRNDILAKCNACFEQPCQNQAQCVALPQREYQCLCQPGYHGKH 966
            |.|::.:.|.:  ....:|    .:|:|::  .||.......|....||..::.|    |:...:
  Rat   794 PRQLQGRSIFA--QDLRLC----LDDVLSR--DCFGLSLLAVAVGTVLPLLQHLC----GWDVWY 846

  Fly   967 CEFMIDACYGNPCRNNATCTVLEEGRFSCQCAP 999
            |   ...|.       |...:|..||.|.|..|
  Rat   847 C---FHLCL-------AWLPLLTRGRRSAQALP 869

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470 12/37 (32%)
leucine-rich repeat 83..104 CDD:275380 8/24 (33%)
LRR_8 102..160 CDD:290566 20/69 (29%)
leucine-rich repeat 105..125 CDD:275380 6/19 (32%)
LRR_RI <119..259 CDD:238064 48/159 (30%)
leucine-rich repeat 126..149 CDD:275380 9/34 (26%)
LRR_8 149..208 CDD:290566 18/61 (30%)
leucine-rich repeat 150..173 CDD:275380 6/22 (27%)
leucine-rich repeat 174..197 CDD:275380 5/22 (23%)
LRR_8 197..256 CDD:290566 24/66 (36%)
leucine-rich repeat 198..221 CDD:275380 10/30 (33%)
leucine-rich repeat 222..245 CDD:275380 8/22 (36%)
leucine-rich repeat 246..371 CDD:275380 31/152 (20%)
LRRCT 254..303 CDD:214507 6/48 (13%)
LRRNT 319..350 CDD:214470 9/56 (16%)
LRR_8 349..406 CDD:290566 15/58 (26%)
LRR_4 371..411 CDD:289563 9/39 (23%)
leucine-rich repeat 372..395 CDD:275380 7/22 (32%)
leucine-rich repeat 396..415 CDD:275380 2/18 (11%)
leucine-rich repeat 420..443 CDD:275380 7/28 (25%)
leucine-rich repeat 444..465 CDD:275380 6/20 (30%)
leucine-rich repeat 468..480 CDD:275378 0/11 (0%)
LRRCT 476..525 CDD:214507 6/48 (13%)
leucine-rich repeat 484..545 CDD:275380 8/60 (13%)
LRRNT 542..574 CDD:214470 4/31 (13%)
leucine-rich repeat 552..570 CDD:275380 2/17 (12%)
leucine-rich repeat 572..596 CDD:275380 2/23 (9%)
LRR_RI <574..>678 CDD:238064 32/107 (30%)
LRR_8 595..655 CDD:290566 23/61 (38%)
leucine-rich repeat 597..620 CDD:275380 8/23 (35%)
leucine-rich repeat 621..644 CDD:275380 8/23 (35%)
leucine-rich repeat 645..668 CDD:275380 8/22 (36%)
leucine-rich repeat 669..756 CDD:275380 13/88 (15%)
LRRCT 677..726 CDD:214507 7/48 (15%)
LRRNT 739..770 CDD:214470 2/30 (7%)
leucine-rich repeat 757..791 CDD:275380 7/47 (15%)
LRR_4 770..807 CDD:289563 16/54 (30%)
LRR_8 790..850 CDD:290566 28/63 (44%)
LRR_4 791..830 CDD:289563 18/42 (43%)
leucine-rich repeat 792..815 CDD:275380 11/26 (42%)
LRR_4 814..863 CDD:289563 19/97 (20%)
leucine-rich repeat 816..839 CDD:275380 6/22 (27%)
leucine-rich repeat 840..861 CDD:275380 8/47 (17%)
LRRCT 872..920 CDD:214507 13/50 (26%)
EGF 935..966 CDD:278437 7/30 (23%)
EGF_CA 971..1007 CDD:238011 8/29 (28%)
EGF_CA 1009..1045 CDD:238011
EGF_CA 1055..1086 CDD:238011
EGF_CA 1088..1124 CDD:238011
Laminin_G_1 1204..1335 CDD:278483
CT 1435..1504 CDD:214482
Tlr9NP_937764.1 leucine-rich repeat 43..64 CDD:275380 8/20 (40%)
LRR_8 63..135 CDD:290566 20/71 (28%)
leucine-rich repeat 65..88 CDD:275380 6/22 (27%)
leucine-rich repeat 89..124 CDD:275380 9/34 (26%)
LRR_RI 123..373 CDD:238064 79/314 (25%)
leucine-rich repeat 125..144 CDD:275380 6/22 (27%)
LRR_8 143..211 CDD:290566 21/67 (31%)
leucine-rich repeat 145..168 CDD:275380 5/22 (23%)
leucine-rich repeat 169..200 CDD:275380 10/30 (33%)
LRR_8 199..254 CDD:290566 18/77 (23%)
leucine-rich repeat 201..221 CDD:275380 8/22 (36%)
leucine-rich repeat 222..245 CDD:275380 8/42 (19%)
leucine-rich repeat 246..285 CDD:275380 14/58 (24%)
LRR_8 284..344 CDD:290566 15/59 (25%)
leucine-rich repeat 286..309 CDD:275380 2/22 (9%)
LRR_RI 310..556 CDD:238064 79/338 (23%)
leucine-rich repeat 310..335 CDD:275380 7/24 (29%)
leucine-rich repeat 336..365 CDD:275380 12/46 (26%)
leucine-rich repeat 393..416 CDD:275380 8/22 (36%)
leucine-rich repeat 477..498 CDD:275380 7/20 (35%)
LRR_RI <490..692 CDD:238064 68/260 (26%)
LRR_8 497..556 CDD:290566 21/58 (36%)
leucine-rich repeat 499..523 CDD:275380 8/23 (35%)
leucine-rich repeat 524..547 CDD:275380 8/22 (36%)
leucine-rich repeat 548..577 CDD:275380 8/44 (18%)
leucine-rich repeat 578..630 CDD:275380 12/91 (13%)
leucine-rich repeat 601..618 CDD:275380 1/16 (6%)
LRR_8 629..690 CDD:290566 28/63 (44%)
leucine-rich repeat 631..655 CDD:275380 10/23 (43%)
leucine-rich repeat 656..679 CDD:275380 9/25 (36%)
leucine-rich repeat 680..703 CDD:275380 8/22 (36%)
LRR_8 704..763 CDD:290566 6/58 (10%)
leucine-rich repeat 704..727 CDD:275380 0/22 (0%)
leucine-rich repeat 728..746 CDD:275380 2/17 (12%)
leucine-rich repeat 753..774 CDD:275380 9/20 (45%)
TIR_2 870..1013 CDD:304906 248/1073 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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