DRSC/TRiP Functional Genomics Resources

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Protein Alignment sli and lrrc17

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:XP_009298620.1 Gene:lrrc17 / 321202 ZFINID:ZDB-GENE-030131-9774 Length:435 Species:Danio rerio


Alignment Length:537 Identity:127/537 - (23%)
Similarity:210/537 - (39%) Gaps:139/537 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 VIYETDFQRLTKLRMLQLTDNQIHTIER---NSFQDLVSLER-LRLNNNRLKAI----PENFVTS 170
            |::..:.::..:.|.::..|   ||.:|   :..:.||:.|: .......|.|:    ||:    
Zfish    13 VVWAAEARKGGRARRVRSRD---HTTKRFAADCKETLVNGEKYFDCQERHLTAVLLGWPED---- 70

  Fly   171 SASLLRLDISNNVITTVGRRVFKGAQSLRSLQLDNNQITCLDEHAFKGLVELEILTLNNNNLTSL 235
               :..|.::.|.|..:....|...::|:||.|..|:|:.:|:.||.||.:|..|.|.:|.|...
Zfish    71 ---IHHLLLARNRIQVLRDNTFSHFRNLKSLDLQQNEISRIDDGAFDGLSKLTTLLLQHNRLQVA 132

  Fly   236 PHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLR--SATRLAPYTRCQSPSQLKGQNVADLHDQ 298
            ...:...:.:|:.|||.|||:.|||.|..|.||::  |...:..|.||..|.:..|:.:..| |.
Zfish   133 SEGMLIPMPQLKYLRLHDNPWRCDCQLDSLVRFIQVPSNRNIGNYARCAEPREFSGRQLKKL-DA 196

  Fly   299 EFKCSGLTEHAPMECGAENSCPHPCRCADGI------------VDCREKSLTSVPVTLPDDTTEL 351
            |..||...|...:........|.|.:.:|..            :|||.:.|.:||..:|.|..:|
Zfish   197 EMLCSPEQEKEAILDPENQQLPAPQKKSDATSLCHTYMHPVPRMDCRNRDLKTVPADIPLDIVKL 261

  Fly   352 RLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNKIKDLPSGVFKG 416
            .|.:|.|.:|..|.|.:.:.|:.::||.|::..|...|.:||..|..|.|..|.::....||.: 
Zfish   262 DLSRNTIKQLRQKEFVNVKELKLLNLSGNSLESIDTAAFTGLLYLGELDLSNNSLRYFQYGVLE- 325

  Fly   417 LGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAMKSIKTVHLAKNPFICD 481
                                   ||:.|..|||.|                        ||:|||
Zfish   326 -----------------------DLYFLKRLSLGD------------------------NPWICD 343

  Fly   482 CNLRWLADYLHKNP-IETSGARCESPKRMHRRRIESLREEKFKCSWD-ELRMKLSGECRMDSDCP 544
            .|:.:|..:|..:| :..:|..|..|             |:|: .|. |..:|     ..:::||
Zfish   344 YNIHYLIYWLKHHPDVSHTGLVCSEP-------------EEFR-GWPVENYVK-----TYNAECP 389

  Fly   545 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 609
                                             .|.:||.:....|.|..|..:..|:...:   
Zfish   390 ---------------------------------KDKQLGNLPDTDLAGNTPLELTAEIDEEE--- 418

  Fly   610 IEPNAFEGASHIQELQL 626
             .|..:.|....:.::|
Zfish   419 -GPRPYRGHKKFEIIRL 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470
leucine-rich repeat 83..104 CDD:275380
LRR_8 102..160 CDD:290566 9/49 (18%)
leucine-rich repeat 105..125 CDD:275380 1/10 (10%)
LRR_RI <119..259 CDD:238064 39/147 (27%)
leucine-rich repeat 126..149 CDD:275380 6/25 (24%)
LRR_8 149..208 CDD:290566 14/63 (22%)
leucine-rich repeat 150..173 CDD:275380 5/27 (19%)
leucine-rich repeat 174..197 CDD:275380 4/22 (18%)
LRR_8 197..256 CDD:290566 22/58 (38%)
leucine-rich repeat 198..221 CDD:275380 11/22 (50%)
leucine-rich repeat 222..245 CDD:275380 5/22 (23%)
leucine-rich repeat 246..371 CDD:275380 44/138 (32%)
LRRCT 254..303 CDD:214507 18/50 (36%)
LRRNT 319..350 CDD:214470 11/42 (26%)
LRR_8 349..406 CDD:290566 19/56 (34%)
LRR_4 371..411 CDD:289563 12/39 (31%)
leucine-rich repeat 372..395 CDD:275380 8/22 (36%)
leucine-rich repeat 396..415 CDD:275380 6/18 (33%)
leucine-rich repeat 420..443 CDD:275380 2/22 (9%)
leucine-rich repeat 444..465 CDD:275380 5/20 (25%)
leucine-rich repeat 468..480 CDD:275378 2/11 (18%)
LRRCT 476..525 CDD:214507 14/49 (29%)
leucine-rich repeat 484..545 CDD:275380 12/62 (19%)
LRRNT 542..574 CDD:214470 2/31 (6%)
leucine-rich repeat 552..570 CDD:275380 0/17 (0%)
leucine-rich repeat 572..596 CDD:275380 5/23 (22%)
LRR_RI <574..>678 CDD:238064 10/53 (19%)
LRR_8 595..655 CDD:290566 5/32 (16%)
leucine-rich repeat 597..620 CDD:275380 3/22 (14%)
leucine-rich repeat 621..644 CDD:275380 1/6 (17%)
leucine-rich repeat 645..668 CDD:275380
leucine-rich repeat 669..756 CDD:275380
LRRCT 677..726 CDD:214507
LRRNT 739..770 CDD:214470
leucine-rich repeat 757..791 CDD:275380
LRR_4 770..807 CDD:289563
LRR_8 790..850 CDD:290566
LRR_4 791..830 CDD:289563
leucine-rich repeat 792..815 CDD:275380
LRR_4 814..863 CDD:289563
leucine-rich repeat 816..839 CDD:275380
leucine-rich repeat 840..861 CDD:275380
LRRCT 872..920 CDD:214507
EGF 935..966 CDD:278437
EGF_CA 971..1007 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1055..1086 CDD:238011
EGF_CA 1088..1124 CDD:238011
Laminin_G_1 1204..1335 CDD:278483
CT 1435..1504 CDD:214482
lrrc17XP_009298620.1 LRR_8 72..129 CDD:290566 19/56 (34%)
leucine-rich repeat 72..94 CDD:275380 4/21 (19%)
LRR_4 94..>129 CDD:289563 15/34 (44%)
leucine-rich repeat 95..118 CDD:275380 11/22 (50%)
leucine-rich repeat 119..142 CDD:275380 5/22 (23%)
leucine-rich repeat 143..190 CDD:275380 20/46 (43%)
LRRCT 151..201 CDD:214507 18/50 (36%)
leucine-rich repeat 191..228 CDD:275380 9/37 (24%)
leucine-rich repeat 229..258 CDD:275380 7/28 (25%)
leucine-rich repeat 259..281 CDD:275380 7/21 (33%)
LRR_8 260..316 CDD:290566 19/55 (35%)
leucine-rich repeat 282..305 CDD:275380 8/22 (36%)
leucine-rich repeat 306..329 CDD:275380 8/46 (17%)
TPKR_C2 338..389 CDD:301599 17/69 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45836
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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