DRSC/TRiP Functional Genomics Resources

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Protein Alignment sli and Slitrk6

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_780708.1 Gene:Slitrk6 / 239250 MGIID:2443198 Length:840 Species:Mus musculus


Alignment Length:970 Identity:216/970 - (22%)
Similarity:339/970 - (34%) Gaps:302/970 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 CPRVCSCTG----LNVDCSHRGLTSVPRKISADVER---LELQGNNLTVIYETDFQRLTKLRMLQ 130
            |..:|:|..    :.::|..:|:..: .:||....|   |.|..|.||:::..||..||....:.
Mouse    31 CDTLCNCEEKDGIMIINCEEKGINKL-SQISVPPSRPFHLSLLNNGLTMLHTNDFSGLTNALSIH 94

  Fly   131 LTDNQIHTIERNSFQDLVSLERLRLNNNRLKAIPENFVTSSASLLRLDISNNVITTVGRRVFKGA 195
            |..|.|..||..:|..|..|::|.:|:|.|:.:.|:                        .|.|.
Mouse    95 LGFNNIADIETGAFNGLGLLKQLHINHNSLEILKED------------------------TFHGL 135

  Fly   196 QSLRSLQLDNNQITCLDEHAFKGLVELEILTLNNNNLTSLPHNIF-----------GG------- 242
            ::|..||.|||.||.::..||..|..|::|.||:|.:.|||.|||           |.       
Mouse   136 ENLEFLQADNNFITIIEPSAFSKLNRLKVLILNDNAIESLPPNIFRFVPLTHLDLRGNQLQTLPY 200

  Fly   243 ------LGRLRALRLSDNPFACDCHLSWLSRFLRS----------------------ATRLAPYT 279
                  :||:..|:|.||.:||:|.|..|..:|.:                      .:||...:
Mouse   201 VGFLEHIGRILDLQLEDNKWACNCELLQLKNWLENMPPQSIIGDVICYSPPPFKGSVLSRLKKES 265

  Fly   280 RCQSP----------------------SQLKGQNVADLHDQEFKCSGLTEH--APMECGAENSCP 320
            .|.:|                      |:|..:|.:.| .|..|..||..:  .|........||
Mouse   266 FCPTPPVYEEHEDPSGSLLAITSSTSDSRLSSKNTSIL-KQPTKAPGLIPYLTKPSTQLPVPYCP 329

  Fly   321 HPCRC-----ADGIVDCREKSLTSV-----PVTLPDDTTELRLEQNFITELPPKSFSSFRRLRRI 375
            .||.|     :..::.|:|:::.|:     |   |.:..:|.|..|.|..|.....:.:..|..:
Mouse   330 IPCNCKVLSPSGLLIHCQERNIESLSDLQPP---PHNPRKLILAGNIIHTLMKSDLTDYFTLEML 391

  Fly   376 DLSNNNISRIAHDALSGLKQLTTLVLYGNKIKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRD 440
            .|.||.|..:...:...|.:|..|.|.||.:..|..|:|.||.||:.|.|..|.:..|....|..
Mouse   392 HLGNNRIEVLEEGSFMNLTRLQKLYLNGNHLTKLNKGMFLGLHSLEYLYLEYNAVKEILPGTFNP 456

  Fly   441 LHSLSLLSLYDNNIQSL------------------------ANGTFDAMKSIKTVHLAKNPFICD 481
            :..|.:|.|.:|.:|.|                        .:...|.:..:..:.|..||:.|.
Mouse   457 MPKLKVLYLNNNLLQVLPAHIFLGIPLTRVNLKTNQFTHLPVSNILDDLDFLIQIDLEDNPWDCS 521

  Fly   482 CNLRWLADYLHK--NPIETSGARCESPKRMHRRRIESLREEKFKCSWDELRMKLSGECRMDSDCP 544
            |:|..|..::||  ....|....|.||..:.::.:::|..                    |..||
Mouse   522 CDLVGLQQWIHKLGKGTMTDDILCTSPGHLDKKELKALNS--------------------DLLCP 566

  Fly   545 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 609
                           ||...| .:|..||.:::....:...::..||..|...|.|.:       
Mouse   567 ---------------GLVNNP-SMPTQTTYVIVTSPTVAADTASTLFSSLTDAVPLSV------- 608

  Fly   610 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 674
                                        :.|||     |.::   |:.|.               
Mouse   609 ----------------------------LILGL-----LIVF---ITIVF--------------- 622

  Fly   675 ASNPFNCNCHLAWFA-----EWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF--KCSSENSEG 732
                  |...:..|.     .:.:||          ...::||.....|.:|.:  |.:...:| 
Mouse   623 ------CAAGIVVFVLHRRRRYKKKK----------VEEQLRDNSPVHLQYSMYGHKTTHHTTE- 670

  Fly   733 CLGDGYCPPSCT-----CTGTVVRCSRNQLKEIPRGIPAETSELYLESNEIEQIHYERIRHL-RS 791
                   .||.:     ....:|...|:     |...|....|:. |.|:.|.   ...:|| ||
Mouse   671 -------RPSSSLYEQHMVSPMVHVYRS-----PSFGPKHLEEVE-ERNDKEG---NDAKHLQRS 719

  Fly   792 LTRLDLSNNQITILSNYTFANLTKLSTLIISYNKLQCLQRHALSGLNNLRVLS----LHGNRISM 852
            |  |:..|:.....||..: ..|..||..||:.....|.|:.|.....|:.|.    |..|...:
Mouse   720 L--LERENHSPLTGSNMKY-KTTDQSTDFISFQDASLLYRNILEKERELQQLGITEYLRKNLAQL 781

  Fly   853 LPE------GSFEDLKSLTHIALGSNPLYCDCGLKWFSDWIKLDYVEPGIARCAEPEQMK 906
            .||      |:.|:|| |....:.|.|      .|...:..|.:|.|......|||:.::
Mouse   782 QPEVEVNYPGAHEELK-LMETLMYSRP------RKVLVEQTKNEYFELKANLHAEPDYLE 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470 7/33 (21%)
leucine-rich repeat 83..104 CDD:275380 4/20 (20%)
LRR_8 102..160 CDD:290566 21/60 (35%)
leucine-rich repeat 105..125 CDD:275380 8/19 (42%)
LRR_RI <119..259 CDD:238064 49/163 (30%)
leucine-rich repeat 126..149 CDD:275380 7/22 (32%)
LRR_8 149..208 CDD:290566 14/58 (24%)
leucine-rich repeat 150..173 CDD:275380 6/22 (27%)
leucine-rich repeat 174..197 CDD:275380 2/22 (9%)
LRR_8 197..256 CDD:290566 29/82 (35%)
leucine-rich repeat 198..221 CDD:275380 11/22 (50%)
leucine-rich repeat 222..245 CDD:275380 12/46 (26%)
leucine-rich repeat 246..371 CDD:275380 38/180 (21%)
LRRCT 254..303 CDD:214507 17/92 (18%)
LRRNT 319..350 CDD:214470 10/40 (25%)
LRR_8 349..406 CDD:290566 16/56 (29%)
LRR_4 371..411 CDD:289563 12/39 (31%)
leucine-rich repeat 372..395 CDD:275380 6/22 (27%)
leucine-rich repeat 396..415 CDD:275380 7/18 (39%)
leucine-rich repeat 420..443 CDD:275380 6/22 (27%)
leucine-rich repeat 444..465 CDD:275380 7/44 (16%)
leucine-rich repeat 468..480 CDD:275378 3/11 (27%)
LRRCT 476..525 CDD:214507 13/50 (26%)
leucine-rich repeat 484..545 CDD:275380 11/62 (18%)
LRRNT 542..574 CDD:214470 7/31 (23%)
leucine-rich repeat 552..570 CDD:275380 3/17 (18%)
leucine-rich repeat 572..596 CDD:275380 5/23 (22%)
LRR_RI <574..>678 CDD:238064 11/103 (11%)
LRR_8 595..655 CDD:290566 6/59 (10%)
leucine-rich repeat 597..620 CDD:275380 2/22 (9%)
leucine-rich repeat 621..644 CDD:275380 3/22 (14%)
leucine-rich repeat 645..668 CDD:275380 3/22 (14%)
leucine-rich repeat 669..756 CDD:275380 14/98 (14%)
LRRCT 677..726 CDD:214507 9/55 (16%)
LRRNT 739..770 CDD:214470 6/35 (17%)
leucine-rich repeat 757..791 CDD:275380 8/34 (24%)
LRR_4 770..807 CDD:289563 11/37 (30%)
LRR_8 790..850 CDD:290566 19/63 (30%)
LRR_4 791..830 CDD:289563 11/38 (29%)
leucine-rich repeat 792..815 CDD:275380 5/22 (23%)
LRR_4 814..863 CDD:289563 17/58 (29%)
leucine-rich repeat 816..839 CDD:275380 7/22 (32%)
leucine-rich repeat 840..861 CDD:275380 8/30 (27%)
LRRCT 872..920 CDD:214507 8/35 (23%)
EGF 935..966 CDD:278437
EGF_CA 971..1007 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1055..1086 CDD:238011
EGF_CA 1088..1124 CDD:238011
Laminin_G_1 1204..1335 CDD:278483
CT 1435..1504 CDD:214482
Slitrk6NP_780708.1 leucine-rich repeat 68..89 CDD:275380 8/20 (40%)
LRR_8 69..124 CDD:290566 20/54 (37%)
LRR 1 89..110 6/20 (30%)
leucine-rich repeat 94..113 CDD:275380 7/18 (39%)
LRR 2 113..134 7/44 (16%)
LRR_8 114..172 CDD:290566 24/81 (30%)
leucine-rich repeat 114..137 CDD:275380 8/46 (17%)
LRR 3 137..158 10/20 (50%)
leucine-rich repeat 138..161 CDD:275380 11/22 (50%)
LRR_8 161..219 CDD:290566 17/57 (30%)
LRR 4 161..182 11/20 (55%)
leucine-rich repeat 162..177 CDD:275380 7/14 (50%)
LRR 5 184..205 1/20 (5%)
leucine-rich repeat 185..260 CDD:275380 13/74 (18%)
leucine-rich repeat 210..222 CDD:275378 4/11 (36%)
TPKR_C2 218..268 CDD:301599 9/49 (18%)
leucine-rich repeat 261..411 CDD:275380 33/153 (22%)
LRR 6 363..384 5/20 (25%)
leucine-rich repeat 365..387 CDD:275380 5/21 (24%)
LRR_8 387..444 CDD:290566 20/56 (36%)
LRR 7 387..408 5/20 (25%)
LRR_4 388..426 CDD:289563 11/37 (30%)
LRR_4 410..449 CDD:289563 15/38 (39%)
LRR 8 411..432 8/20 (40%)
leucine-rich repeat 412..435 CDD:275380 10/22 (45%)
LRR_8 435..493 CDD:290566 13/57 (23%)
LRR 9 435..456 7/20 (35%)
leucine-rich repeat 436..459 CDD:275380 6/22 (27%)
LRR 10 459..480 6/20 (30%)
leucine-rich repeat 460..481 CDD:275380 6/20 (30%)
LRR 11 482..503 0/20 (0%)
LRRCT 516..566 CDD:214507 14/69 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 717..736 7/20 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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