DRSC/TRiP Functional Genomics Resources

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Protein Alignment sli and slitrk6

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:XP_004911884.2 Gene:slitrk6 / 100489665 XenbaseID:XB-GENE-980871 Length:826 Species:Xenopus tropicalis


Alignment Length:881 Identity:204/881 - (23%)
Similarity:332/881 - (37%) Gaps:233/881 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 LGSVGIHIPGGGVG--VITEARCPRVCSCTGLN----VDCSHRGL-----TSVPRKISADVERLE 106
            |..:...||.|...  :::.|.|..:|.|:..:    |:|..:|:     .::|.....|   |.
 Frog     7 LSCILFSIPSGMTDSELLSMAACKTLCLCSEKDGIFFVNCEDKGIINLSEINIPPFQYMD---LN 68

  Fly   107 LQGNNLTVIYETDFQRLTKLRMLQLTDNQIHTIERNSFQDLVSLERLRLNNNRLKAIPENFVTSS 171
            |..|.|..|:|.:......:..|.|..|.|..||..:|.:|..|::|.:|:|.|:          
 Frog    69 LLNNGLFKIHENELSSFNNIMSLHLGFNNIADIEPGAFNNLSILKKLHINHNSLE---------- 123

  Fly   172 ASLLRLDISNNVITTVGRRVFKGAQSLRSLQLDNNQITCLDEHAFKGLVELEILTLNNNNLTSLP 236
              :||.|            .|||.::|..||.|||.||.::.:.|..|.:|::|.||:|.:.|||
 Frog   124 --ILRDD------------TFKGLENLEFLQADNNFITTIEPNTFSKLTKLKVLILNDNAIESLP 174

  Fly   237 HNIF-----------GG-------------LGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAP 277
            .|||           |.             :||:..|::.||.:.|:|.|..|..:|.:..|.:.
 Frog   175 SNIFRFVPLTHLDLRGNQLQTLPYVGLLEHIGRITELQIEDNKWVCNCDLLQLKLWLENMPRQST 239

  Fly   278 YTR--CQSPSQLKGQNVADLHDQEFKCS-----------------------------GLTEHAPM 311
            ...  |.|||..||..:..|.::.| ||                             .|.:.||.
 Frog   240 IGEVVCYSPSNFKGTLLRRLQNEMF-CSNQDKLENPSWPLSLVGTASINNDRTPTKIALVQKAPT 303

  Fly   312 ECGA------------ENSCPHPCRCAD-----GIVDCREKSLTSV-----PVTLPDDTTELRLE 354
            :..|            :..||.||.|:.     .::.|:|::|.|:     |   |.:..:|.|.
 Frog   304 KDPALFIPPKSSTLLPDLYCPVPCHCSSHTLPGTLIHCQERNLESLSDIGRP---PQNPRKLILA 365

  Fly   355 QNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNKIKDLPSGVFKGLGS 419
            .|.|..|....|:.:..|..:.|.||:|..:...:...|.:|..|.|.||:::.|...:|.||.:
 Frog   366 GNLINVLHKGDFTDYENLEMLHLGNNHIEIVEELSFFNLTKLQKLYLNGNRLRGLNPSMFIGLIN 430

  Fly   420 LQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTF---------------------- 462
            |:.|.|..|.|..|....|..:..|.:|.|.:|.||.|.:..|                      
 Frog   431 LEYLYLEFNFIKEILPGTFSLMSRLKILYLNNNLIQFLPDHIFSGVPLTSLNLKSNQFLSFPVSN 495

  Fly   463 --DAMKSIKTVHLAKNPFICDCNLRWLADYLHKNP-IETSGARCESPKRMHRRRIESLREEKFKC 524
              :.:.|:..:.|..||:.|.||:..|.:::.:.. |..|...|.:|..:.::.::|::.| ..|
 Frog   496 VLEDLSSLLQIELQDNPWECTCNIIGLKNWVQQQTNIMVSEIPCSNPVELLKKDLKSIQNE-ILC 559

  Fly   525 SWDELRMKLSGECRMDSDCPAMCHCEGTTVDCTGRGLKE-IPRDIPLHTTELLLNDNELGRISSD 588
              .||.:...    :.|..|... ...:|||...|.|.: ||..:.:....:||....|   .|.
 Frog   560 --PELVITYP----VQSSYPPQV-ATTSTVDTILRSLSDSIPLSVVILGLLILLLTTVL---CSA 614

  Fly   589 GLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN--- 649
            |:...:.|. :...|:.|:.| |...:   ..|||....|.......:.:....|.:.:.||   
 Frog   615 GIIVLVLHR-RRRSKKKQVNGEIRETS---PVHIQYSMYGHKTTHHTTERPSSTLCEQQLLNPIV 675

  Fly   650 -LYDNQISCVMPG-----------SFEHLNS---------LTSLNL---ASNPFNCNCHLAWF-A 689
             :|.|.......|           |.:|..|         |||..:   ||:|..   .||:. |
 Frog   676 QVYQNPPFIPKQGDEDIEEKVEVDSKKHRRSILERENDSPLTSSKVNFKASDPQE---FLAFHDA 737

  Fly   690 EWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENSEGCLGDGYCPPSCTCTGTVVRCSR 754
            .:|.:..:.            ::.:||.|..:|:                             .|
 Frog   738 SYLYRNMME------------KENEIKQLGIAEY-----------------------------LR 761

  Fly   755 NQLKEIPRGIPAETSELYLESNEIEQIHYERIRHLR 790
            ..:..:|..:.......:.|...:|.:.|.|.|.||
 Frog   762 KNIAHLPSDLDMHYPRSHEEVKLMEALLYSRPRKLR 797

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470 8/38 (21%)
leucine-rich repeat 83..104 CDD:275380 5/29 (17%)
LRR_8 102..160 CDD:290566 18/57 (32%)
leucine-rich repeat 105..125 CDD:275380 6/19 (32%)
LRR_RI <119..259 CDD:238064 46/163 (28%)
leucine-rich repeat 126..149 CDD:275380 8/22 (36%)
LRR_8 149..208 CDD:290566 17/58 (29%)
leucine-rich repeat 150..173 CDD:275380 5/22 (23%)
leucine-rich repeat 174..197 CDD:275380 6/22 (27%)
LRR_8 197..256 CDD:290566 27/82 (33%)
leucine-rich repeat 198..221 CDD:275380 10/22 (45%)
leucine-rich repeat 222..245 CDD:275380 12/46 (26%)
leucine-rich repeat 246..371 CDD:275380 40/177 (23%)
LRRCT 254..303 CDD:214507 15/50 (30%)
LRRNT 319..350 CDD:214470 11/40 (28%)
LRR_8 349..406 CDD:290566 17/56 (30%)
LRR_4 371..411 CDD:289563 12/39 (31%)
leucine-rich repeat 372..395 CDD:275380 6/22 (27%)
leucine-rich repeat 396..415 CDD:275380 6/18 (33%)
leucine-rich repeat 420..443 CDD:275380 7/22 (32%)
leucine-rich repeat 444..465 CDD:275380 8/44 (18%)
leucine-rich repeat 468..480 CDD:275378 3/11 (27%)
LRRCT 476..525 CDD:214507 12/49 (24%)
leucine-rich repeat 484..545 CDD:275380 11/61 (18%)
LRRNT 542..574 CDD:214470 8/32 (25%)
leucine-rich repeat 552..570 CDD:275380 7/18 (39%)
leucine-rich repeat 572..596 CDD:275380 5/23 (22%)
LRR_RI <574..>678 CDD:238064 28/131 (21%)
LRR_8 595..655 CDD:290566 14/64 (22%)
leucine-rich repeat 597..620 CDD:275380 4/23 (17%)
leucine-rich repeat 621..644 CDD:275380 4/22 (18%)
leucine-rich repeat 645..668 CDD:275380 7/37 (19%)
leucine-rich repeat 669..756 CDD:275380 15/90 (17%)
LRRCT 677..726 CDD:214507 9/49 (18%)
LRRNT 739..770 CDD:214470 2/30 (7%)
leucine-rich repeat 757..791 CDD:275380 8/34 (24%)
LRR_4 770..807 CDD:289563 7/21 (33%)
LRR_8 790..850 CDD:290566 1/1 (100%)
LRR_4 791..830 CDD:289563 204/881 (23%)
leucine-rich repeat 792..815 CDD:275380
LRR_4 814..863 CDD:289563
leucine-rich repeat 816..839 CDD:275380
leucine-rich repeat 840..861 CDD:275380
LRRCT 872..920 CDD:214507
EGF 935..966 CDD:278437
EGF_CA 971..1007 CDD:238011
EGF_CA 1009..1045 CDD:238011
EGF_CA 1055..1086 CDD:238011
EGF_CA 1088..1124 CDD:238011
Laminin_G_1 1204..1335 CDD:278483
CT 1435..1504 CDD:214482
slitrk6XP_004911884.2 PPP1R42 67..216 CDD:411060 50/172 (29%)
leucine-rich repeat 67..87 CDD:275380 6/19 (32%)
LRR_8 87..144 CDD:404697 23/80 (29%)
leucine-rich repeat 90..111 CDD:275380 8/20 (40%)
leucine-rich repeat 112..135 CDD:275380 11/46 (24%)
leucine-rich repeat 136..159 CDD:275380 10/22 (45%)
leucine-rich repeat 160..175 CDD:275380 7/14 (50%)
leucine-rich repeat 183..258 CDD:275380 18/74 (24%)
leucine-rich repeat 208..220 CDD:275378 3/11 (27%)
TPKR_C2 216..264 CDD:417692 14/47 (30%)
leucine-rich repeat 259..382 CDD:275380 25/126 (20%)
PPP1R42 337..512 CDD:411060 44/177 (25%)
leucine-rich repeat 383..406 CDD:275380 6/22 (27%)
leucine-rich repeat 407..430 CDD:275380 9/22 (41%)
leucine-rich repeat 431..454 CDD:275380 7/22 (32%)
leucine-rich repeat 455..475 CDD:275380 8/19 (42%)
leucine-rich repeat 478..500 CDD:275380 0/21 (0%)
TPKR_C2 511..>542 CDD:417692 9/30 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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