DRSC/TRiP Functional Genomics Resources

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Protein Alignment sli and lrfn1.1

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:XP_002940407.1 Gene:lrfn1.1 / 100487064 XenbaseID:XB-GENE-6045969 Length:742 Species:Xenopus tropicalis


Alignment Length:890 Identity:190/890 - (21%)
Similarity:282/890 - (31%) Gaps:332/890 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   520 EKFKCSWDELRMKLSGECRMDSDCPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLNDN 580
            ||..|.   |.|...|.......||..|.|:..    |:.|...||..:|..|...|.||.|.||
 Frog     2 EKLLCL---LVMGALGYVEATQHCPGRCLCQSNSPTLTMLCAKTGLLFVPPAIDRRTVELRLTDN 63

  Fly   581 ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL 645
            .:..|.... |..:.:||.|.|.||.::.|.|.||.....::.|.:..|::..:.::.|.||..|
 Frog    64 FITIIRRKD-FANMTNLVHLTLSRNTISQIVPLAFFDLRSLRALHMNSNRLSLLRHEHFRGLGNL 127

  Fly   646 KTLNLYDNQISCVMPGSF-EHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK 709
            :.|.|.:||||.:.||:| |.|:::..|:|                                   
 Frog   128 RHLILGNNQISFIQPGAFVEFLSTVEDLDL----------------------------------- 157

  Fly   710 VRDVQIKDLPHSEFKCSSENSEGCLGDGYCPPSCTCTGTVVRCSRNQLKEIPRGIPAETSELYLE 774
                                                       |.|.|:|:|             
 Frog   158 -------------------------------------------SYNNLEELP------------- 166

  Fly   775 SNEIEQIHYERIRHLRSLTRLDLSNNQITILSNYTFANLTKLSTLIISYNKLQCLQRHALSGLNN 839
                    :|.|..:.:|..|.|.:|.|..::..||..|.||..|.::.|:|     |.|.. :|
 Frog   167 --------WEDIGQMVNLNTLTLDHNLIDHIAEGTFTMLHKLVRLDMTSNQL-----HKLPP-DN 217

  Fly   840 LRVLSLHGNRISMLPEGSFEDLKSLTHIALGSNPLYCDCGLKWFSDWIKLDYVEPGIARCAEPEQ 904
            |.:      |..:|.........||. |:.|.|||:|:|.|.|.....:.|.:|    .||.|||
 Frog   218 LFL------RSQVLANARGSSPSSLA-ISFGGNPLHCNCELLWLRRLTREDDLE----TCASPEQ 271

  Fly   905 MKDKLILSTPSSSFVCRGRVRNDILAKCNACFEQPCQNQAQCVALPQREYQCLC----QPGYH-- 963
            :.||...|.....|:|    ...::.:..|  .:|...:.|.|:|     :|..    :|..|  
 Frog   272 LTDKYFWSIQEEEFIC----DPPLITRHYA--SKPFVMEGQSVSL-----KCKAVGDPEPSIHWI 325

  Fly   964 ---GK--HCEFMIDACYGNPCRNNATCTVLEEGRFSC--QCAPGYTGARCETNI------DDCLG 1015
               ||  |....:.| :.|...:....|:.:.|.|:|  ..|.|...|..|..|      .:...
 Frog   326 APDGKLIHNTTRLVA-HDNGSLDIMITTLKDSGSFTCIASNAAGEATAPVELAIVPLPLLVNNTA 389

  Fly  1016 EIKCQNNATCIDGVESYKCECQPGFSGEFCDTK-------------------------------- 1048
            .||.|:     .|........:|||:    |||                                
 Frog   390 HIKEQD-----PGSSDITTSTKPGFN----DTKSHHDRRIVVDKLKSTSVVIQWPSERHIPGIRM 445

  Fly  1049 --IQFCS------------PE-----FNPCANGAK---CM-----DHFTHYSCDCQAGFHGTNCT 1086
              ||:.|            |.     .|..|.|.:   |:     |..|..:.....|....:..
 Frog   446 YQIQYNSSLDDSLVYRMIPPSNRSFLVNDLAPGREYDLCVLAVYDDGMTALTATRVVGCVQFSTR 510

  Fly  1087 DNIDDCQN-HMCQNGGTCVDGIND----------------YQCRCPDDYTGKYCEGHNMISMMYP 1134
            |....||. |....|||.:..|..                |:.     |:|:...|...:|.:|.
 Frog   511 DESGQCQPLHTQFLGGTMIIIIGGIIVASVLVFIIILMIRYKV-----YSGQEEGGKTRVSNVYS 570

  Fly  1135 QTS------------------------PCQNHECKHGVCFQPNAQGSDYLCRCHPGYTGKWCEYL 1175
            ||:                        ||:||.          .:..|         .||....|
 Frog   571 QTNGQQAVASALSCAKLGENNYEPLPPPCKNHP----------VESKD---------PGKEDPQL 616

  Fly  1176 TSISFVHNNSFVELEPLRTRPEANVTIV--FSSAEQNG---------------ILMYDGQD---- 1219
            :....    ...||:..|||..:::..|  .||...:|               ::..|||:    
 Frog   617 SPTPI----PLTELDKRRTRTSSDLQTVALLSSLSGDGEQTETSALGSTTSLCLISTDGQNQQGP 677

  Fly  1220 -------AHLAVELFNGRIRVSYDVGNHPVSTMYSFEMVADGKYH 1257
                   .|          |.|:| |::.:...:|:...|..|.|
 Frog   678 KAIPRTYQH----------RFSFD-GDYTLFQSHSYPRRARTKRH 711

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470
leucine-rich repeat 83..104 CDD:275380
LRR_8 102..160 CDD:290566
leucine-rich repeat 105..125 CDD:275380
LRR_RI <119..259 CDD:238064
leucine-rich repeat 126..149 CDD:275380
LRR_8 149..208 CDD:290566
leucine-rich repeat 150..173 CDD:275380
leucine-rich repeat 174..197 CDD:275380
LRR_8 197..256 CDD:290566
leucine-rich repeat 198..221 CDD:275380
leucine-rich repeat 222..245 CDD:275380
leucine-rich repeat 246..371 CDD:275380
LRRCT 254..303 CDD:214507
LRRNT 319..350 CDD:214470
LRR_8 349..406 CDD:290566
LRR_4 371..411 CDD:289563
leucine-rich repeat 372..395 CDD:275380
leucine-rich repeat 396..415 CDD:275380
leucine-rich repeat 420..443 CDD:275380
leucine-rich repeat 444..465 CDD:275380
leucine-rich repeat 468..480 CDD:275378
LRRCT 476..525 CDD:214507 2/4 (50%)
leucine-rich repeat 484..545 CDD:275380 7/24 (29%)
LRRNT 542..574 CDD:214470 11/35 (31%)
leucine-rich repeat 552..570 CDD:275380 6/21 (29%)
leucine-rich repeat 572..596 CDD:275380 8/23 (35%)
LRR_RI <574..>678 CDD:238064 36/104 (35%)
LRR_8 595..655 CDD:290566 19/59 (32%)
leucine-rich repeat 597..620 CDD:275380 10/22 (45%)
leucine-rich repeat 621..644 CDD:275380 5/22 (23%)
leucine-rich repeat 645..668 CDD:275380 12/23 (52%)
leucine-rich repeat 669..756 CDD:275380 3/86 (3%)
LRRCT 677..726 CDD:214507 0/48 (0%)
LRRNT 739..770 CDD:214470 5/30 (17%)
leucine-rich repeat 757..791 CDD:275380 5/33 (15%)
LRR_4 770..807 CDD:289563 7/36 (19%)
LRR_8 790..850 CDD:290566 17/59 (29%)
LRR_4 791..830 CDD:289563 13/38 (34%)
leucine-rich repeat 792..815 CDD:275380 8/22 (36%)
LRR_4 814..863 CDD:289563 11/48 (23%)
leucine-rich repeat 816..839 CDD:275380 6/22 (27%)
leucine-rich repeat 840..861 CDD:275380 3/20 (15%)
LRRCT 872..920 CDD:214507 18/47 (38%)
EGF 935..966 CDD:278437 9/41 (22%)
EGF_CA 971..1007 CDD:238011 9/37 (24%)
EGF_CA 1009..1045 CDD:238011 8/41 (20%)
EGF_CA 1055..1086 CDD:238011 7/43 (16%)
EGF_CA 1088..1124 CDD:238011 10/52 (19%)
Laminin_G_1 1204..1335 CDD:278483 15/80 (19%)
CT 1435..1504 CDD:214482
lrfn1.1XP_002940407.1 leucine-rich repeat 55..78 CDD:275380 8/23 (35%)
PPP1R42 58..208 CDD:411060 53/249 (21%)
leucine-rich repeat 79..102 CDD:275380 10/22 (45%)
leucine-rich repeat 103..126 CDD:275380 5/22 (23%)
leucine-rich repeat 127..151 CDD:275380 12/23 (52%)
leucine-rich repeat 152..175 CDD:275380 9/121 (7%)
leucine-rich repeat 176..199 CDD:275380 8/22 (36%)
leucine-rich repeat 200..218 CDD:275380 6/23 (26%)
LRRCT 243..288 CDD:214507 19/52 (37%)
Ig 290..378 CDD:416386 21/95 (22%)
Ig strand A 290..293 CDD:409353 0/2 (0%)
Ig strand A' 298..301 CDD:409353 0/2 (0%)
Ig strand B 307..315 CDD:409353 3/12 (25%)
Ig strand C 321..326 CDD:409353 1/4 (25%)
Ig strand C' 329..331 CDD:409353 1/1 (100%)
Ig strand D 337..341 CDD:409353 1/4 (25%)
Ig strand E 344..348 CDD:409353 0/3 (0%)
Ig strand F 358..365 CDD:409353 2/6 (33%)
Ig strand G 368..378 CDD:409353 3/9 (33%)
fn3 418..492 CDD:394996 8/73 (11%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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