DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sli and slit1

DIOPT Version :9

Sequence 1:NP_001261017.1 Gene:sli / 36746 FlyBaseID:FBgn0264089 Length:2157 Species:Drosophila melanogaster
Sequence 2:NP_001090702.1 Gene:slit1 / 100036682 XenbaseID:XB-GENE-1007728 Length:1529 Species:Xenopus tropicalis


Alignment Length:1510 Identity:657/1510 - (43%)
Similarity:917/1510 - (60%) Gaps:96/1510 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 CPRVCSCTGLNVDCSHRGLTSVPRKISADVERLELQGNNLTVIYETDFQRLTKLRMLQLTDNQIH 137
            ||.:|:|:|..|||....|..||:.|....|||||.|||:|.|.:.||..|.:||:|||.:|||.
 Frog    33 CPALCTCSGTTVDCHGLALKGVPKNIPRSTERLELYGNNITRINKNDFSGLKQLRVLQLMENQIS 97

  Fly   138 TIERNSFQDLVSLERLRLNNNRLKAIPENFVTSSASLLRLDISNNVITTVGRRVFKGAQSLRSLQ 202
            .:||.:|.|:..|||||||.|:|..:||....::.:|.|||:|.|:|..:.|:.|:||..|::||
 Frog    98 NVERGAFDDMKELERLRLNRNQLHTLPELLFQNNQALSRLDLSENLIQAIPRKTFRGATELKNLQ 162

  Fly   203 LDNNQITCLDEHAFKGLVELEILTLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSR 267
            ||.|||:|:::.||:.|..||:|||||||:|::|.:.|..:.:||..||..|...|||||:|||:
 Frog   163 LDKNQISCIEDGAFRALRGLEVLTLNNNNITAIPVSSFNHMPKLRTFRLHSNNLFCDCHLAWLSQ 227

  Fly   268 FLRSATRLAPYTRCQSPSQLKGQNVADLHDQEFKCSGLTEHAPME-CGAE-NSCPHPCRCADGIV 330
            :||....:..:|:|..||.|:|.|||::...||.|||.::....: |... .|||..|.|::|||
 Frog   228 WLRQRPTIGLFTQCTGPSPLRGLNVAEIQKHEFSCSGQSDPPSSQICSLSIGSCPAMCTCSNGIV 292

  Fly   331 DCREKSLTSVPVTLPDDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQ 395
            |||.|.||::|..||:..||:|||.|.|..:||.:||.:::|||||||||.||.||.||..||:.
 Frog   293 DCRGKGLTAIPANLPETMTEIRLELNGIKSVPPGAFSPYKKLRRIDLSNNQISEIAPDAFQGLRS 357

  Fly   396 LTTLVLYGNKIKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANG 460
            |.:||||||||.|||.|||.||.:|||||||||:|:|||.|.|:||.:|||||||||.|||||.|
 Frog   358 LNSLVLYGNKITDLPKGVFSGLHALQLLLLNANKINCIRADTFQDLQNLSLLSLYDNKIQSLAKG 422

  Fly   461 TFDAMKSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 525
            ||.|:::|:|:|||:|||||||||:||||:|..||||||||||.||:|:..:||..::.:||:||
 Frog   423 TFAALRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETSGARCASPRRLANKRIGQIKSKKFRCS 487

  Fly   526 WDELRM-------KLSGECRMDSDCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELG 583
            ..|...       :|:.||..|..||..|.||...|||:...|.:||..||..|.||.||:||:.
 Frog   488 AKEQYFIPGTEDYQLNSECNSDVVCPPKCRCESNVVDCSNLKLTKIPDRIPQSTAELRLNNNEIA 552

  Fly   584 RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT- 647
            .:.:.|||.:||||.|:.|..|:::.||..|||||:.:.||.|..|.::.:.:.||.||..|:| 
 Frog   553 TLEATGLFRKLPHLKKINLSNNKISEIEDAAFEGAASVSELHLTANHLESVRSGMFRGLEGLRTL 617

  Fly   648 -----------------------LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 689
                                   |:|||||||.:.||:|:.|.||::|||.:|||||||.|||..
 Frog   618 MLRNNRVSCVHNDSFTGLRNVRLLSLYDNQISTITPGAFDTLQSLSTLNLLANPFNCNCQLAWLG 682

  Fly   690 EWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENSE-GCLGDGYCPPSCTCTGTVVRCS 753
            :||||:.:..|..||..|..:|.:.::|:...:|:|.....| .|.....||..|||..||||||
 Frog   683 DWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCEDGQEELSCAPQPQCPQECTCLDTVVRCS 747

  Fly   754 RNQLKEIPRGIPAETSELYLESNEIEQIHYERIRHLRSLTRLDLSNNQITILSNYTFANLTKLST 818
            ...|..:|:|||...:||||:.|:...:. .::...:.|..:|||||:|:.|||.:|.|:::|:|
 Frog   748 NKHLLSLPKGIPKNVTELYLDGNQFTMVP-GQLSSFKYLQLVDLSNNKISSLSNSSFTNMSQLTT 811

  Fly   819 LIISYNKLQCLQRHALSGLNNLRVLSLHGNRISMLPEGSFEDLKSLTHIALGSNPLYCDCGLKWF 883
            ||:|||.|||:...|..||.:||:||:|||.||.||||.|.|:.||:|:|:|:|||||||.|:|.
 Frog   812 LILSYNSLQCIPPLAFEGLRSLRLLSVHGNDISSLPEGIFSDVTSLSHLAIGANPLYCDCNLRWL 876

  Fly   884 SDWIKLDYVEPGIARCAEPEQMKDKLILSTPSSSFVCRGRVRNDILAKCNACFEQPCQNQAQCVA 948
            |:|:|..|.|||||||..|.:|..||:|:||:..|.|.|....:||||||.|...||:||..|..
 Frog   877 SNWVKTGYKEPGIARCTGPPEMDGKLLLTTPAKKFECNGPPSLNILAKCNPCLSDPCKNQGTCQD 941

  Fly   949 LPQREYQCLCQPGYHGKHCEFMIDACYGNPCRNNATCTVLEEGR-FSCQCAPGYTGARCETNIDD 1012
            ...:.|:|:|..|:.||:||..::||..|||.|...|...|||. |.|.||.|:.|..|..|.||
 Frog   942 DAVQYYKCVCPAGFKGKNCEISLNACSSNPCENQGLCLSKEEGSGFMCTCADGFEGPTCAVNKDD 1006

  Fly  1013 CLGEIKCQNNATCIDGVESYKCECQPGFSGEFCDTKIQFCSPEFNPCANGAKCMDHFTHYSCDCQ 1077
            |... .|:|..||:||:.:|.|.|...::||:|:..:..||.:.|||.:.:||........|:|.
 Frog  1007 CKYS-DCENGGTCLDGINNYTCLCPSQYTGEYCEHLVDICSTDLNPCHSDSKCTVTPEGPKCECA 1070

  Fly  1078 AGFHGTNCTDNIDDCQNHMCQNGGTCVDGINDYQCRCPDDYTGKYCEGHNMISMMYPQTSPCQNH 1142
            .|:.|.:|:.|.|||::|.|||...|||.:|.|.|.|.:.|:|:.||      |.....|||:..
 Frog  1071 PGYGGDDCSLNYDDCKDHRCQNNALCVDEVNGYSCLCTEGYSGQLCE------MPSQAPSPCKLT 1129

  Fly  1143 ECKHGV-CFQPNAQGSDYLCRCHPGYTGKWCEYLTSISFVHNNSFVELEPLRTRPEANVTIVFSS 1206
            .|::|. |.:   .|:..:|:|.||:.|..||.|.|::||..:::::...|:..|.||:|:..|:
 Frog  1130 PCQNGANCIE---VGNSAVCQCLPGFGGSKCEKLLSVNFVDRDTYLQFTDLQNWPRANITLQVST 1191

  Fly  1207 AEQNGILMYDGQDAHLAVELFNGRIRVSYDVGNHPVSTMYSFEMVADGKYHAVELLAIKKNFTLR 1271
            ||.||||:|:|...|:||||:.|.:|||||.|:.|.|.:||.|.:.||::|.|||:...:...|.
 Frog  1192 AEDNGILLYNGDHDHMAVELYQGHVRVSYDPGSFPSSAIYSAETINDGQFHTVELVTFDQMVNLS 1256

  Fly  1272 VDRGLARSIINEGSNDYLKLTTPMFLGGLPVDPAQQAYKNWQIRNLTSFKGCMKEVWINHKLVDF 1336
            :|.|...::...|.:..|....|:::||:|||....|::.|||.|.|||.||::.::||::|.||
 Frog  1257 IDGGAPMTMDKFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQILNGTSFHGCIRNLYINNELQDF 1321

  Fly  1337 GNAQRQQKITPGCA------LLEGEQQEEEDDEQDFMDET----PHIKEEPVDPCLENKCRRGSR 1391
            ...|.:..:.|||.      .|.|..|....:......||    ||..::..|||..:||..|: 
 Frog  1322 TKTQMKPGVVPGCEPCRKLFCLHGICQPNAANGPVCHCETGWAGPHCDQQLNDPCQGHKCVHGA- 1385

  Fly  1392 CVPNSNARDGYQCKCKHGQRGRYCDQGEGSTEPPTVT---------------------------- 1428
            |:|.....  |.|.|:.|.:|..|:| :|....|..|                            
 Frog  1386 CMPLDALT--YSCLCQDGYKGALCNQ-QGELYNPCKTLQCQHGRCQISDLGEAYCECESGYVGDN 1447

  Fly  1429 --AASTCRKEQVREYYTEND----CRSRQPLKYAKCVGGCGNQ-CCAAKIVRRRKVRMVCSNNRK 1486
              ..|.||.|.||:||....    |::.:.:.:.:|.|.|.|| ||....::|||....||:...
 Frog  1448 CDQESECRGEPVRDYYQVQRGYAICQTTRTVSWVECRGSCHNQGCCTGLRMKRRKYTFECSDGSS 1512

  Fly  1487 YIKNLDIVRKCGCTK 1501
            ::::::...||||.:
 Frog  1513 FVEDVEKPIKCGCAQ 1527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sliNP_001261017.1 LRRNT 73..103 CDD:214470 12/29 (41%)
leucine-rich repeat 83..104 CDD:275380 7/20 (35%)
LRR_8 102..160 CDD:290566 33/57 (58%)
leucine-rich repeat 105..125 CDD:275380 11/19 (58%)
LRR_RI <119..259 CDD:238064 66/139 (47%)
leucine-rich repeat 126..149 CDD:275380 12/22 (55%)
LRR_8 149..208 CDD:290566 28/58 (48%)
leucine-rich repeat 150..173 CDD:275380 11/22 (50%)
leucine-rich repeat 174..197 CDD:275380 11/22 (50%)
LRR_8 197..256 CDD:290566 29/58 (50%)
leucine-rich repeat 198..221 CDD:275380 12/22 (55%)
leucine-rich repeat 222..245 CDD:275380 12/22 (55%)
leucine-rich repeat 246..371 CDD:275380 58/126 (46%)
LRRCT 254..303 CDD:214507 22/48 (46%)
LRRNT 319..350 CDD:214470 16/30 (53%)
LRR_8 349..406 CDD:290566 35/56 (63%)
LRR_4 371..411 CDD:289563 28/39 (72%)
leucine-rich repeat 372..395 CDD:275380 17/22 (77%)
leucine-rich repeat 396..415 CDD:275380 14/18 (78%)
leucine-rich repeat 420..443 CDD:275380 17/22 (77%)
leucine-rich repeat 444..465 CDD:275380 17/20 (85%)
leucine-rich repeat 468..480 CDD:275378 8/11 (73%)
LRRCT 476..525 CDD:214507 31/48 (65%)
leucine-rich repeat 484..545 CDD:275380 31/67 (46%)
LRRNT 542..574 CDD:214470 14/31 (45%)
leucine-rich repeat 552..570 CDD:275380 7/17 (41%)
leucine-rich repeat 572..596 CDD:275380 11/23 (48%)
LRR_RI <574..>678 CDD:238064 50/127 (39%)
LRR_8 595..655 CDD:290566 28/83 (34%)
leucine-rich repeat 597..620 CDD:275380 11/22 (50%)
leucine-rich repeat 621..644 CDD:275380 8/22 (36%)
leucine-rich repeat 645..668 CDD:275380 14/46 (30%)
leucine-rich repeat 669..756 CDD:275380 39/87 (45%)
LRRCT 677..726 CDD:214507 21/48 (44%)
LRRNT 739..770 CDD:214470 16/30 (53%)
leucine-rich repeat 757..791 CDD:275380 10/33 (30%)
LRR_4 770..807 CDD:289563 13/36 (36%)
LRR_8 790..850 CDD:290566 32/59 (54%)
LRR_4 791..830 CDD:289563 22/38 (58%)
leucine-rich repeat 792..815 CDD:275380 12/22 (55%)
LRR_4 814..863 CDD:289563 28/48 (58%)
leucine-rich repeat 816..839 CDD:275380 13/22 (59%)
leucine-rich repeat 840..861 CDD:275380 14/20 (70%)
LRRCT 872..920 CDD:214507 28/47 (60%)
EGF 935..966 CDD:278437 11/30 (37%)
EGF_CA 971..1007 CDD:238011 16/36 (44%)
EGF_CA 1009..1045 CDD:238011 15/35 (43%)
EGF_CA 1055..1086 CDD:238011 9/30 (30%)
EGF_CA 1088..1124 CDD:238011 17/35 (49%)
Laminin_G_1 1204..1335 CDD:278483 56/130 (43%)
CT 1435..1504 CDD:214482 22/72 (31%)
slit1NP_001090702.1 LRRNT 32..63 CDD:214470 12/29 (41%)
leucine-rich repeat 42..61 CDD:275380 7/18 (39%)
leucine-rich repeat 62..85 CDD:275380 13/22 (59%)
LRR <70..>218 CDD:227223 70/147 (48%)
leucine-rich repeat 86..109 CDD:275380 12/22 (55%)
leucine-rich repeat 110..133 CDD:275380 11/22 (50%)
leucine-rich repeat 134..157 CDD:275380 11/22 (50%)
leucine-rich repeat 158..181 CDD:275380 12/22 (55%)
leucine-rich repeat 182..205 CDD:275380 12/22 (55%)
leucine-rich repeat 206..310 CDD:275380 47/103 (46%)
TPKR_C2 214..263 CDD:387596 22/48 (46%)
LRRNT 281..312 CDD:214470 16/30 (53%)
internalin_A 310..>681 CDD:380193 196/370 (53%)
leucine-rich repeat 312..333 CDD:275380 10/20 (50%)
leucine-rich repeat 334..357 CDD:275380 17/22 (77%)
leucine-rich repeat 358..378 CDD:275380 15/19 (79%)
leucine-rich repeat 406..429 CDD:275380 18/22 (82%)
leucine-rich repeat 522..540 CDD:275380 8/17 (47%)
internalin_A 531..>865 CDD:380193 145/334 (43%)
leucine-rich repeat 541..565 CDD:275380 11/23 (48%)
leucine-rich repeat 566..589 CDD:275380 11/22 (50%)
leucine-rich repeat 590..613 CDD:275380 8/22 (36%)
leucine-rich repeat 614..637 CDD:275380 2/22 (9%)
leucine-rich repeat 638..661 CDD:275380 12/22 (55%)
leucine-rich repeat 662..784 CDD:275380 49/122 (40%)
leucine-rich repeat 663..753 CDD:275380 39/89 (44%)
LRR_8 785..843 CDD:338972 32/57 (56%)
leucine-rich repeat 785..808 CDD:275380 12/22 (55%)
leucine-rich repeat 809..832 CDD:275380 13/22 (59%)
leucine-rich repeat 833..853 CDD:275380 14/19 (74%)
PCC 841..>978 CDD:188093 70/136 (51%)
EGF 967..999 CDD:333761 15/31 (48%)
EGF_CA 1003..1039 CDD:238011 15/36 (42%)
EGF_CA 1042..1078 CDD:238011 11/35 (31%)
EGF_CA 1083..1117 CDD:238011 16/33 (48%)
EGF 1126..1155 CDD:333761 9/31 (29%)
LamG 1184..1317 CDD:214598 57/132 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 120 1.000 Domainoid score I5680
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1341 1.000 Inparanoid score I144
OMA 1 1.010 - - QHG45950
OrthoDB 1 1.010 - - D20003at33208
OrthoFinder 1 1.000 - - FOG0001593
OrthoInspector 1 1.000 - - otm47721
Panther 1 1.100 - - O PTHR45836
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3290
SonicParanoid 1 1.000 - - X1145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.110

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