DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8249 and VBA4

DIOPT Version :9

Sequence 1:NP_001246349.1 Gene:CG8249 / 36742 FlyBaseID:FBgn0034045 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_010404.1 Gene:VBA4 / 851697 SGDID:S000002526 Length:768 Species:Saccharomyces cerevisiae


Alignment Length:512 Identity:107/512 - (20%)
Similarity:183/512 - (35%) Gaps:135/512 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 IVSGLDRLLKTPPPGEQTRA-------VRRQVIAVILANVGVFSTGMTLAMPTATLHQLKDTTEP 79
            :.:||:     ||..|.|.:       .||::.:..:.....|     :||         |::..
Yeast   224 VENGLN-----PPYVENTSSDELVHDLTRRRIFSSCMCTYLFF-----IAM---------DSSII 269

  Fly    80 VHLNDSQASWFASVNALSAPIGG-LLSGFLLDRIGRKKSLI--VLNVLIILAWILLATPSESDQN 141
            :.:....||.|..:..||..|.. |||..:...:..|.|||  |..:|.|..:..:.....|..:
Yeast   270 LVIASKIASEFHELWRLSLVISAYLLSNAIGQLVFLKLSLISSVKLLLCIAQFSFILGGYLSWSS 334

  Fly   142 AFFWQLIVSRFMLGVGMGLASAPPGVYAAEISVPKTRGSLILGTSISVAGGITI----------L 196
            |.||..|.:|.:.|.|.|...|.........|........:..:.|:.|.|:.|          .
Yeast   335 AHFWTFIFARCVTGFGGGSLIALKSTIMNRFSQKNDSRYSLSASMITFAMGVVIGPFMMNLFDSS 399

  Fly   197 YGIGYCIRDDFRLIALICCGYQLVALLCVLPLPESHCWLLSKKRVTEAKRSLNYFRGFNKSDEIT 261
            :|.|:  |:.|                 ::|:|                     |...|.|    
Yeast   400 HGSGW--RNAF-----------------LIPVP---------------------FCLVNAS---- 420

  Fly   262 HPQVLEEFQLLQKSLQQRNT-AVKESFWRNLHEPEVYKPLVILMSLFAFQQLTGI---------- 315
              .:|.:...::.:|..|.| .:.:.|...|..|::|:.|.:.:.|..|.|:|.:          
Yeast   421 --IMLADMYSVKSTLYGRPTPTLWKRFKNTLLSPDLYEILTLTLFLLCFVQVTSLDLTGLKNNTM 483

  Fly   316 FVVIVFAVQISQEAGIEIDPFMCAVLIGLARLITTCPMGYI-LEWWGRRRAGIISTLGMSVCMFL 379
            ...::|:|.|           :|.:|..|.....|.....| :...|.:|. |.:.:|:|.|...
Yeast   484 IQALLFSVII-----------VCGILFFLIETSDTYMNSVISMSLQGDKRL-IWTMIGISFCFAA 536

  Fly   380 LAGHSQIEILKEVPYLPVVAIVGFIVLSTLGL----------YTLPFFMISELFPQK-----VRG 429
            |        :..:|:.....|: .:.||||.|          ..|.:|.:|..:..|     ::.
Yeast   537 L--------MCIIPFGTTYFII-VLNLSTLQLAERLSPFFFSIVLGYFSVSYFWKSKGQNFLLKF 592

  Fly   430 PASGLTVAVGMFISFVVLKTYPGIKEYLGMSNCFIIFGVMALFALIFVYLALPETRR 486
            ..||.|:.:.:.:..|.| ..|..|:|:.:|..| :...|.|..|..:|....|.|:
Yeast   593 VLSGATLLLYVALMGVSL-NLPVWKQYICLSLPF-LGSSMILTLLSNLYHEYHEQRK 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8249NP_001246349.1 MFS 49..479 CDD:119392 96/469 (20%)
Sugar_tr 60..496 CDD:278511 98/467 (21%)
VBA4NP_010404.1 MFS 259..>414 CDD:421695 41/208 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0254
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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