DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Poxn and Sdcbp

DIOPT Version :9

Sequence 1:NP_001261016.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_114192.1 Gene:Sdcbp / 83841 RGDID:621497 Length:300 Species:Rattus norvegicus


Alignment Length:44 Identity:12/44 - (27%)
Similarity:24/44 - (54%) Gaps:7/44 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 IRLKEENSGMFAWEIREQLQQQRVCDPSSVPSISSINRILRNSG 133
            :|||..::|:|.     ||.|..  .|:|:..:...:::|:.:|
  Rat   129 LRLKSVDNGIFV-----QLVQAN--SPASLVGLRFGDQVLQING 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxnNP_001261016.1 HTH 5..133 CDD:304362 11/42 (26%)
SdcbpNP_114192.1 Interaction with PDCD6IP. /evidence=ECO:0000250|UniProtKB:O08992 2..104
LYPX(n)L motif 1. /evidence=ECO:0000250|UniProtKB:O08992 3..7
LYPX(n)L motif 2. /evidence=ECO:0000250|UniProtKB:O08992 47..51
LYPX(n)L motif 3. /evidence=ECO:0000250|UniProtKB:O08992 51..55
PDZ_signaling 114..193 CDD:238492 12/44 (27%)
PDZ_signaling 198..271 CDD:238492
phosphatidylinositol-4, 5-bisphosphate-binding. /evidence=ECO:0000250|UniProtKB:O00560 252..253
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.