DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxn and Pax4

DIOPT Version :10

Sequence 1:NP_476686.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_113987.1 Gene:Pax4 / 83630 RGDID:620433 Length:349 Species:Rattus norvegicus


Alignment Length:412 Identity:122/412 - (29%)
Similarity:171/412 - (41%) Gaps:114/412 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPHTGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRFYETG 65
            |...|.:.||||||:||||||||...|::||.||:.|:|||||||.|.||:|||||||.|:|.||
  Rat     1 MQQDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILGRYYRTG 65

  Fly    66 SIRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSISSINRILR 130
            .:.|..|||||.: :|||.||.:|.:||:|...:|||||:.||..:.:|.....||:|||||:||
  Rat    66 VLEPKGIGGSKPR-LATPAVVARIAQLKDEYPALFAWEIQRQLCAEGLCTQDKAPSVSSINRVLR 129

  Fly   131 NSGLWTDEMTSSQQNAAAAAAAAAAAAHQAGSGPSNGYGGQAPPPPVTVAPPTPAATPSIARYAK 195
              .|..|:.....|..:                            |..:||..|:.         
  Rat   130 --ALQEDQRLHWTQLRS----------------------------PAVLAPALPSP--------- 155

  Fly   196 PPALMMNSAGEMPIKPAPKMPPSMGHGHSHGLNPNVSGLDLSYSALHKHWLWNPSLLYYTQAHIQ 260
                  :|..|.|..|.|        |.||                ....:::|.         |
  Rat   156 ------HSNCEAPRGPHP--------GTSH----------------RNRTIFSPG---------Q 181

  Fly   261 AQAAASGGQFLPYAGGYLPHAMAAAAASSTSALGGFT------------KSESSIDLST--PGAA 311
            |:|...     .:..|..|.::.....::.::|...|            :.:..:...|  |||:
  Rat   182 AEALEK-----EFQRGQYPDSVVRGKLAAATSLPEDTVRVWFSNRRAKWRRQEKLKWETQMPGAS 241

  Fly   312 GDALSDCDSGKSSPAALSLTASGGGNGAGSAPEASPGSTLSHSRKRNPYSIEELLKKPEKRLRLD 376
            .|.:..    |.||..:|         |..:|.:.|.:.|....:.||...:........|...|
  Rat   242 QDLMVP----KDSPGIIS---------AQQSPGSVPSAALPVLEQLNPSFCQLCWGAVPDRCSSD 293

  Fly   377 SNRLECLESS-SCESSQDSPVA 397
            :....||:.. .|.|.  .|||
  Rat   294 TTSQACLQPYWECHSL--LPVA 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxnNP_476686.1 HTH_ARSR 5..133 CDD:481197 74/127 (58%)
Pax4NP_113987.1 PAX 5..129 CDD:128645 72/124 (58%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 8..64 39/55 (71%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 83..131 23/49 (47%)
Homeodomain 172..227 CDD:459649 8/68 (12%)
Transcription repression 278..349 9/38 (24%)

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